Variant report

Variant	rs17149393
Chromosome Location	chr7:86971554-86971555
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr7:86971549-86971871	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
CROT	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11760687	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11760719	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11762311	1.00[CEU][hapmap]
rs11767948	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11768281	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11771466	1.00[CEU][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11771569	1.00[CEU][hapmap]
rs11773103	1.00[CEU][hapmap]
rs11971131	1.00[CEU][hapmap]
rs17149389	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55746521	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55953428	0.83[AMR][1000 genomes]
rs56146479	0.83[AMR][1000 genomes]
rs6945385	0.91[ASN][1000 genomes]
rs73194650	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73194657	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73194661	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73194669	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73194676	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs802047	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv888677	chr7:86802025-87781111	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv464622	chr7:86832603-87541248	Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv607725	chr7:86832603-87541248	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
7	nsv1029486	chr7:86856387-87121976	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv539004	chr7:86856387-87121976	Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
9	esv1814401	chr7:86857553-87034167	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
10	esv1826474	chr7:86857553-87034167	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
11	nsv428177	chr7:86857553-87034167	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
12	esv1828294	chr7:86857553-87147397	Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
13	nsv1024376	chr7:86905796-87129346	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
14	nsv1026153	chr7:86905796-87258822	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
15	nsv888678	chr7:86932085-87101407	Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86951000-86972600	Weak transcription	Fetal Kidney	kidney
2	chr7:86958400-86972600	Weak transcription	Osteobl	bone
3	chr7:86958800-86972600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr7:86959000-86973200	Weak transcription	A549	lung
5	chr7:86959000-86973400	Weak transcription	Brain Hippocampus Middle	brain
6	chr7:86959400-86972600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr7:86959400-86973800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:86959400-86973800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr7:86959400-86973800	Weak transcription	Thymus	Thymus
10	chr7:86959400-86974200	Weak transcription	Small Intestine	intestine
11	chr7:86959400-86974400	Weak transcription	Spleen	Spleen
12	chr7:86959600-86973000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr7:86959600-86973400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr7:86959600-86974200	Weak transcription	Colonic Mucosa	Colon
15	chr7:86959800-86974200	Weak transcription	Esophagus	oesophagus
16	chr7:86959800-86974200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr7:86960000-86971800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr7:86960000-86972600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr7:86960000-86973600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr7:86960600-86973800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr7:86960600-86974200	Weak transcription	Placenta	Placenta
22	chr7:86960600-86974200	Weak transcription	Lung	lung
23	chr7:86961200-86973400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr7:86963000-86972800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr7:86963600-86973800	Weak transcription	HSMM	muscle
26	chr7:86963600-86974200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr7:86964000-86972600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr7:86964000-86974200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:86964400-86972600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr7:86964600-86973600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr7:86964600-86973800	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr7:86965400-86974000	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr7:86965400-86974200	Weak transcription	HSMMtube	muscle
34	chr7:86966400-86973800	Weak transcription	Stomach Mucosa	stomach
35	chr7:86966600-86971800	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr7:86967200-86972600	Weak transcription	Brain Anterior Caudate	brain
37	chr7:86967200-86972800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr7:86967200-86973600	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr7:86968800-86972600	Weak transcription	HUVEC	blood vessel
40	chr7:86969000-86973200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr7:86969200-86974000	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr7:86969400-86971800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr7:86969400-86973600	Weak transcription	Primary B cells from cord blood	blood
44	chr7:86969600-86972000	Weak transcription	HepG2	liver
45	chr7:86970400-86972200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr7:86970600-86972600	Weak transcription	Aorta	Aorta
47	chr7:86970800-86971800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr7:86970800-86972400	Enhancers	NHLF	lung
49	chr7:86970800-86972800	Weak transcription	Brain Substantia Nigra	brain
50	chr7:86970800-86972800	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links