Variant report

Variant	rs73204641
Chromosome Location	chr3:191343116-191343117
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11712348	0.92[ASN][1000 genomes]
rs11713378	1.00[ASN][1000 genomes]
rs13089779	0.92[ASN][1000 genomes]
rs13323801	0.86[ASN][1000 genomes]
rs1464650	0.96[ASN][1000 genomes]
rs1464651	0.96[ASN][1000 genomes]
rs2365534	0.90[ASN][1000 genomes]
rs2886486	0.96[ASN][1000 genomes]
rs4393947	0.88[ASN][1000 genomes]
rs4434185	0.92[ASN][1000 genomes]
rs4687237	0.96[ASN][1000 genomes]
rs4687239	0.96[ASN][1000 genomes]
rs4687251	0.92[ASN][1000 genomes]
rs4687252	0.92[ASN][1000 genomes]
rs57196585	1.00[ASN][1000 genomes]
rs57290773	0.92[ASN][1000 genomes]
rs57667341	0.92[ASN][1000 genomes]
rs6762390	0.92[ASN][1000 genomes]
rs73204648	1.00[AMR][1000 genomes]
rs73204661	1.00[AMR][1000 genomes]
rs73204669	0.92[ASN][1000 genomes]
rs73204674	1.00[AMR][1000 genomes]
rs7633696	0.92[ASN][1000 genomes]
rs9290998	0.92[ASN][1000 genomes]
rs9840419	0.92[ASN][1000 genomes]
rs9846006	0.96[ASN][1000 genomes]
rs9863483	0.88[ASN][1000 genomes]
rs9875132	0.96[ASN][1000 genomes]
rs9879803	0.94[ASN][1000 genomes]
rs9882196	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008969	chr3:191192569-191383856	Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv915689	chr3:191244719-191479974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv997817	chr3:191284834-191475809	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1001082	chr3:191320636-191579587	Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:191342600-191343600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links