Variant report

Variant	rs9879803
Chromosome Location	chr3:191377500-191377501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:191371142..191373244-chr3:191374844..191377761,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11712348	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11713378	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13089779	0.94[ASN][1000 genomes]
rs13323801	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13433981	0.80[EUR][1000 genomes]
rs1464649	0.80[EUR][1000 genomes]
rs1464650	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1464651	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2365534	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2886486	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4393947	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4434185	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4687235	0.80[EUR][1000 genomes]
rs4687237	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4687239	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4687251	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4687252	0.94[ASN][1000 genomes]
rs57196585	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57290773	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57667341	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6762390	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73204638	0.80[EUR][1000 genomes]
rs73204640	0.80[EUR][1000 genomes]
rs73204641	0.94[ASN][1000 genomes]
rs73204644	0.80[EUR][1000 genomes]
rs73204669	0.94[ASN][1000 genomes]
rs7433470	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7633696	0.94[ASN][1000 genomes]
rs9290998	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9816423	0.80[EUR][1000 genomes]
rs9840419	0.94[ASN][1000 genomes]
rs9846006	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9863483	0.90[ASN][1000 genomes]
rs9875132	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9882196	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008969	chr3:191192569-191383856	Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv915689	chr3:191244719-191479974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv997817	chr3:191284834-191475809	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1001082	chr3:191320636-191579587	Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1009378	chr3:191359361-191928703	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1000060	chr3:191359361-191935048	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv437360	chr3:191371101-191392897	Genic enhancers Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:191374800-191380000	Strong transcription	HUES6 Cell Line	embryonic stem cell
2	chr3:191376400-191378000	Active TSS	K562	blood

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