Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11712348	0.91[EUR][1000 genomes]
rs11713378	0.94[EUR][1000 genomes]
rs13323801	0.83[EUR][1000 genomes]
rs13433981	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1464649	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1464650	0.94[EUR][1000 genomes]
rs1464651	0.94[EUR][1000 genomes]
rs2365534	0.86[EUR][1000 genomes]
rs2886486	0.94[EUR][1000 genomes]
rs4393947	0.90[EUR][1000 genomes]
rs4434185	0.86[EUR][1000 genomes]
rs4687226	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4687235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4687237	0.93[EUR][1000 genomes]
rs4687239	0.94[EUR][1000 genomes]
rs4687251	0.84[EUR][1000 genomes]
rs57196585	0.94[EUR][1000 genomes]
rs57290773	0.86[EUR][1000 genomes]
rs57667341	0.86[EUR][1000 genomes]
rs6762390	0.83[EUR][1000 genomes]
rs73204638	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73204640	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73204644	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73204669	0.82[EUR][1000 genomes]
rs7433470	0.88[EUR][1000 genomes]
rs9290998	0.83[EUR][1000 genomes]
rs9825110	0.89[EUR][1000 genomes]
rs9834613	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9844704	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9846006	0.94[EUR][1000 genomes]
rs9856910	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9875132	0.94[EUR][1000 genomes]
rs9879803	0.80[EUR][1000 genomes]
rs9882196	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008969	chr3:191192569-191383856	Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv915689	chr3:191244719-191479974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv997817	chr3:191284834-191475809	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1001082	chr3:191320636-191579587	Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:191343400-191344800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr3:191343600-191344600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:191343600-191344800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:191343800-191344200	Enhancers	Fetal Lung	lung

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