Variant report

Variant	rs9844704
Chromosome Location	chr3:191395769-191395770
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:191395265..191397942-chr3:191403159..191405641,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11712348	0.84[EUR][1000 genomes]
rs11713378	0.84[EUR][1000 genomes]
rs13323801	0.88[EUR][1000 genomes]
rs13433981	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1464649	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1464650	0.84[EUR][1000 genomes]
rs1464651	0.84[EUR][1000 genomes]
rs2365534	0.93[EUR][1000 genomes]
rs2886486	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4393947	0.85[EUR][1000 genomes]
rs4434185	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4687226	0.89[EUR][1000 genomes]
rs4687235	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4687237	0.83[EUR][1000 genomes]
rs4687239	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4687251	0.89[EUR][1000 genomes]
rs57196585	0.84[EUR][1000 genomes]
rs57290773	0.93[EUR][1000 genomes]
rs57667341	0.93[EUR][1000 genomes]
rs6762390	0.88[EUR][1000 genomes]
rs73204638	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73204640	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73204644	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73204669	0.86[EUR][1000 genomes]
rs7433470	0.83[EUR][1000 genomes]
rs9290998	0.88[EUR][1000 genomes]
rs9816423	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9825110	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9834613	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9846006	0.84[EUR][1000 genomes]
rs9875132	0.84[EUR][1000 genomes]
rs9882196	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915689	chr3:191244719-191479974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv997817	chr3:191284834-191475809	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1001082	chr3:191320636-191579587	Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1009378	chr3:191359361-191928703	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1000060	chr3:191359361-191935048	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1002406	chr3:191380544-191404841	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv1002112	chr3:191395769-191471002	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:191390800-191406400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:191392200-191404400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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