Variant report
| Variant | rs73204638 |
|---|---|
| Chromosome Location | chr3:191342254-191342255 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs11712348 | 0.91[EUR][1000 genomes] |
| rs11713378 | 0.94[EUR][1000 genomes] |
| rs13323801 | 0.83[EUR][1000 genomes] |
| rs13433981 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1464649 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1464650 | 0.94[EUR][1000 genomes] |
| rs1464651 | 0.94[EUR][1000 genomes] |
| rs2365534 | 0.86[EUR][1000 genomes] |
| rs2886486 | 0.94[EUR][1000 genomes] |
| rs4393947 | 0.90[EUR][1000 genomes] |
| rs4434185 | 0.86[EUR][1000 genomes] |
| rs4687226 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs4687235 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4687237 | 0.93[EUR][1000 genomes] |
| rs4687239 | 0.94[EUR][1000 genomes] |
| rs4687251 | 0.84[EUR][1000 genomes] |
| rs57196585 | 0.94[EUR][1000 genomes] |
| rs57290773 | 0.86[EUR][1000 genomes] |
| rs57667341 | 0.86[EUR][1000 genomes] |
| rs6762390 | 0.83[EUR][1000 genomes] |
| rs73204640 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73204644 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73204669 | 0.82[EUR][1000 genomes] |
| rs7433470 | 0.88[EUR][1000 genomes] |
| rs9290998 | 0.83[EUR][1000 genomes] |
| rs9816423 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9825110 | 0.89[EUR][1000 genomes] |
| rs9834613 | 0.86[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs9844704 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9846006 | 0.94[EUR][1000 genomes] |
| rs9856910 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs9875132 | 0.94[EUR][1000 genomes] |
| rs9879803 | 0.80[EUR][1000 genomes] |
| rs9882196 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1008969 | chr3:191192569-191383856 | Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv915689 | chr3:191244719-191479974 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv997817 | chr3:191284834-191475809 | Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv1001082 | chr3:191320636-191579587 | Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | esv3366836 | chr3:191341857-191342305 | Enhancers | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:191342200-191342600 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
