Variant report
| Variant | rs73204902 |
|---|---|
| Chromosome Location | chr4:60545224-60545225 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:60543813..60546033-chr4:60553313..60556008,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs55699291 | 1.00[AMR][1000 genomes] |
| rs56393602 | 1.00[AMR][1000 genomes] |
| rs56700262 | 1.00[AMR][1000 genomes] |
| rs57463164 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57628077 | 1.00[AMR][1000 genomes] |
| rs58084437 | 1.00[AMR][1000 genomes] |
| rs73198592 | 1.00[AMR][1000 genomes] |
| rs73200956 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73204901 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73820666 | 1.00[AMR][1000 genomes] |
| rs996995 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1012748 | chr4:60385942-60546407 | Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1007782 | chr4:60385942-60550708 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | esv2760852 | chr4:60424576-60863454 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv594253 | chr4:60487235-60549283 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv594254 | chr4:60529232-60609054 | Enhancers Active TSS Flanking Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv980424 | chr4:60543627-60561102 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:60543400-60550000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
