Variant report

Variant	rs73211903
Chromosome Location	chr7:116753202-116753203
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:116751039..116753262-chr7:116765666..116767700,2	K562	blood:
2	chr7:116748940..116751206-chr7:116751575..116753976,2	K562	blood:
3	7:116604327-116608063..7:116748134-116754654	GM12878	blood:
4	chr7:116751335..116754820-chr7:116754826..116760392,6	K562	blood:
5	chr7:116752240..116755049-chr7:116766540..116769189,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228368	Chromatin interaction
ENSG00000004866	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73210117	1.00[AFR][1000 genomes]
rs73210188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73210190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73210192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73210195	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116725400-116766400	Weak transcription	Brain Germinal Matrix	brain
2	chr7:116737400-116758800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:116738400-116774200	Weak transcription	Ovary	ovary
4	chr7:116738400-116779600	Weak transcription	Esophagus	oesophagus
5	chr7:116738800-116760400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:116738800-116763400	Weak transcription	Hela-S3	cervix
7	chr7:116739400-116758800	Weak transcription	NH-A	brain
8	chr7:116743800-116760200	Weak transcription	Placenta	Placenta
9	chr7:116744600-116753400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:116745600-116754600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:116745600-116763600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:116749800-116754600	Enhancers	Fetal Heart	heart
13	chr7:116750600-116758800	Weak transcription	Fetal Lung	lung
14	chr7:116750600-116759000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr7:116750800-116755400	Weak transcription	Spleen	Spleen
16	chr7:116750800-116758800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr7:116750800-116758800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:116750800-116764600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr7:116751000-116754000	Weak transcription	Fetal Muscle Trunk	muscle
20	chr7:116751200-116756000	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr7:116751200-116758400	Weak transcription	HUVEC	blood vessel
22	chr7:116751200-116758600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr7:116751200-116758800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr7:116751200-116761400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr7:116751200-116762600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr7:116751200-116762600	Weak transcription	NHDF-Ad	bronchial
27	chr7:116751400-116753400	Weak transcription	Fetal Brain Male	brain
28	chr7:116751400-116753800	Weak transcription	Right Ventricle	heart
29	chr7:116751400-116763400	Weak transcription	Colon Smooth Muscle	Colon
30	chr7:116751400-116763600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr7:116751400-116764600	Weak transcription	Duodenum Mucosa	Duodenum
32	chr7:116751400-116764600	Weak transcription	Lung	lung
33	chr7:116751400-116778600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr7:116751800-116753400	Weak transcription	HSMMtube	muscle
35	chr7:116751800-116753800	Weak transcription	Pancreas	Pancrea
36	chr7:116751800-116759400	Weak transcription	Primary hematopoietic stem cells	blood
37	chr7:116751800-116763800	Weak transcription	Fetal Intestine Small	intestine
38	chr7:116751800-116764400	Weak transcription	Fetal Intestine Large	intestine
39	chr7:116752000-116753800	Weak transcription	Fetal Brain Female	brain
40	chr7:116752000-116753800	Weak transcription	Right Atrium	heart
41	chr7:116752000-116753800	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr7:116752000-116755200	Weak transcription	GM12878-XiMat	blood
43	chr7:116752000-116764600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr7:116752000-116764600	Weak transcription	Left Ventricle	heart
45	chr7:116752600-116753600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr7:116752600-116755400	Enhancers	Fetal Muscle Leg	muscle
47	chr7:116752800-116754200	Enhancers	K562	blood
48	chr7:116752800-116755200	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr7:116753000-116754200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr7:116753200-116754200	Enhancers	Aorta	Aorta

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