Variant report

Variant	rs73216078
Chromosome Location	chr3:111763575-111763576
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111752540..111756075-chr3:111760637..111763869,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176040	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs56163753	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7650263	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111757600-111767800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:111760600-111766600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:111760600-111767600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:111760600-111767600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:111762200-111764000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:111762400-111763800	Enhancers	HUVEC	blood vessel
7	chr3:111762400-111771000	Weak transcription	Gastric	stomach
8	chr3:111762600-111765600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:111762600-111767800	Weak transcription	Fetal Intestine Large	intestine
10	chr3:111763000-111765600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:111763000-111765600	Weak transcription	HMEC	breast
12	chr3:111763000-111765600	Weak transcription	NHEK	skin
13	chr3:111763000-111765800	Weak transcription	NH-A	brain
14	chr3:111763000-111766400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:111763000-111767400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr3:111763000-111767600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr3:111763200-111764200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:111763200-111766600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:111763200-111767600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr3:111763200-111772800	Weak transcription	Thymus	Thymus
21	chr3:111763400-111765600	Weak transcription	A549	lung
22	chr3:111763400-111769600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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