Variant report

Variant	rs7650263
Chromosome Location	chr3:111762961-111762962
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:111762244..111763263-chr3:111830391..111831101,4	MCF-7	breast:
2	chr3:111752540..111756075-chr3:111760637..111763869,3	MCF-7	breast:
3	chr3:111707963..111708464-chr3:111762324..111763155,2	K562	blood:
4	chr3:111707324..111708507-chr3:111762237..111763099,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176040	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56163753	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73216078	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9864383	0.88[CEU][hapmap]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111756200-111763200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:111757600-111767800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:111758200-111763000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:111760600-111766600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr3:111760600-111767600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:111760600-111767600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:111761400-111763200	Enhancers	Stomach Mucosa	stomach
8	chr3:111761600-111763000	Enhancers	Brain Cingulate Gyrus	brain
9	chr3:111762000-111763000	Active TSS	Brain Angular Gyrus	brain
10	chr3:111762200-111763000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:111762200-111763000	Active TSS	Brain Anterior Caudate	brain
12	chr3:111762200-111763000	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr3:111762200-111763000	Enhancers	NHEK	skin
14	chr3:111762200-111763200	Weak transcription	Fetal Intestine Small	intestine
15	chr3:111762200-111764000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:111762400-111763000	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr3:111762400-111763000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr3:111762400-111763000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:111762400-111763000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:111762400-111763000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:111762400-111763000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr3:111762400-111763000	Active TSS	Adipose Nuclei	Adipose
23	chr3:111762400-111763000	Enhancers	Liver	Liver
24	chr3:111762400-111763000	Active TSS	Brain Hippocampus Middle	brain
25	chr3:111762400-111763000	Active TSS	Pancreatic Islets	Pancreatic Islet
26	chr3:111762400-111763000	Active TSS	Right Atrium	heart
27	chr3:111762400-111763000	Active TSS	A549	lung
28	chr3:111762400-111763000	Enhancers	HMEC	breast
29	chr3:111762400-111763000	Enhancers	NH-A	brain
30	chr3:111762400-111763000	Active TSS	NHLF	lung
31	chr3:111762400-111763000	Active TSS	Osteobl	bone
32	chr3:111762400-111763400	Enhancers	Fetal Thymus	thymus
33	chr3:111762400-111763800	Enhancers	HUVEC	blood vessel
34	chr3:111762400-111771000	Weak transcription	Gastric	stomach
35	chr3:111762600-111763000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr3:111762600-111763000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr3:111762600-111763000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
38	chr3:111762600-111763000	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr3:111762600-111763000	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr3:111762600-111763000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr3:111762600-111763000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr3:111762600-111763000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
43	chr3:111762600-111763000	Enhancers	Fetal Heart	heart
44	chr3:111762600-111763000	Active TSS	Stomach Smooth Muscle	stomach
45	chr3:111762600-111763000	Flanking Active TSS	Dnd41	blood
46	chr3:111762600-111763000	Active TSS	Hela-S3	cervix
47	chr3:111762600-111763400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr3:111762600-111765600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr3:111762600-111767800	Weak transcription	Fetal Intestine Large	intestine
50	chr3:111762800-111763000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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