Variant report

Variant	rs73216376
Chromosome Location	chr5:107750232-107750233
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10515387	1.00[AMR][1000 genomes]
rs17161231	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17161245	1.00[AMR][1000 genomes]
rs17161251	1.00[AMR][1000 genomes]
rs4585429	1.00[AMR][1000 genomes]
rs57333159	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60251636	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61592750	1.00[AMR][1000 genomes]
rs73214569	1.00[AMR][1000 genomes]
rs73214571	1.00[AMR][1000 genomes]
rs73214575	1.00[AMR][1000 genomes]
rs73214583	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73214584	1.00[AMR][1000 genomes]
rs73214586	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73214589	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73214590	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73214592	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73214593	1.00[AMR][1000 genomes]
rs73214599	1.00[AMR][1000 genomes]
rs73216304	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73216318	1.00[AMR][1000 genomes]
rs73216327	1.00[AMR][1000 genomes]
rs73216340	0.82[AFR][1000 genomes]
rs73216343	0.82[AFR][1000 genomes]
rs73216354	0.82[AFR][1000 genomes]
rs73216373	0.82[AFR][1000 genomes]
rs73216377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv882686	chr5:107564746-107769095	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv968111	chr5:107743066-107755991	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107747800-107750600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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