Variant report

Variant	rs7321701
Chromosome Location	chr13:79820675-79820676
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs7320046	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73543925	1.00[EUR][1000 genomes]
rs73557952	1.00[EUR][1000 genomes]
rs73560568	1.00[EUR][1000 genomes]
rs73564694	1.00[EUR][1000 genomes]
rs7992682	1.00[EUR][1000 genomes]
rs9593388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9601202	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9601203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916612	chr13:79669876-79820692	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv523536	chr13:79820126-79824974	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79817600-79824400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr13:79819800-79821000	Enhancers	GM12878-XiMat	blood
3	chr13:79820000-79821000	Enhancers	Primary B cells from peripheral blood	blood
4	chr13:79820200-79820800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr13:79820200-79820800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr13:79820400-79820800	Enhancers	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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