Variant report

Variant	rs7321707
Chromosome Location	chr13:48514427-48514428
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11839719	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12428259	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12429137	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12430773	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12431098	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12431108	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12583188	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1326138	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs1326139	0.85[ASN][1000 genomes]
rs1326140	0.82[ASN][1000 genomes]
rs1853929	0.81[ASN][1000 genomes]
rs4941619	0.92[ASN][1000 genomes]
rs4941625	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs4942733	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6561429	0.89[ASN][1000 genomes]
rs7327265	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73477056	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73477058	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73487297	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73489242	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73493339	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73493351	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73495307	0.89[ASN][1000 genomes]
rs73495326	0.89[ASN][1000 genomes]
rs7982426	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7985357	0.85[ASN][1000 genomes]
rs7991049	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7992167	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7999360	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9526417	0.82[ASN][1000 genomes]
rs9534914	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933980	chr13:48431000-48557419	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48501000-48531200	Weak transcription	Spleen	Spleen
2	chr13:48502000-48530800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:48503800-48516800	Weak transcription	NHDF-Ad	bronchial
4	chr13:48506000-48531400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr13:48506800-48522600	Weak transcription	Fetal Brain Male	brain
6	chr13:48507200-48524000	Weak transcription	Lung	lung
7	chr13:48507200-48548800	Weak transcription	Stomach Mucosa	stomach
8	chr13:48507800-48515200	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr13:48507800-48515200	Weak transcription	Osteobl	bone
10	chr13:48507800-48530600	Weak transcription	Brain Angular Gyrus	brain
11	chr13:48508000-48515200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr13:48508000-48515200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr13:48508000-48515400	Weak transcription	Fetal Kidney	kidney
14	chr13:48508000-48516200	Weak transcription	Brain Substantia Nigra	brain
15	chr13:48508000-48522400	Weak transcription	GM12878-XiMat	blood
16	chr13:48508000-48531400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr13:48508200-48515400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr13:48508200-48515800	Weak transcription	Psoas Muscle	Psoas
19	chr13:48508200-48520000	Weak transcription	HepG2	liver
20	chr13:48508200-48529600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr13:48508400-48515200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr13:48508600-48515400	Weak transcription	Brain Hippocampus Middle	brain
23	chr13:48508600-48530800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr13:48508800-48515200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr13:48508800-48522000	Weak transcription	NH-A	brain
26	chr13:48509000-48515200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr13:48509000-48530800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr13:48509200-48528400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr13:48509400-48515200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr13:48510200-48515400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr13:48510600-48515400	Weak transcription	Colon Smooth Muscle	Colon
32	chr13:48510800-48517400	Strong transcription	Primary T cells from cord blood	blood
33	chr13:48510800-48517400	Strong transcription	Left Ventricle	heart
34	chr13:48511000-48515200	Weak transcription	Right Ventricle	heart
35	chr13:48511000-48515400	Weak transcription	Fetal Heart	heart
36	chr13:48511000-48515400	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr13:48511000-48516400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr13:48511000-48517600	Strong transcription	Fetal Muscle Trunk	muscle
39	chr13:48511000-48530600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr13:48511000-48536600	Weak transcription	Esophagus	oesophagus
41	chr13:48511400-48516600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr13:48511600-48514800	Strong transcription	A549	lung
43	chr13:48511600-48514800	Strong transcription	HSMM	muscle
44	chr13:48511800-48515200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr13:48511800-48516600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr13:48511800-48518800	Strong transcription	Dnd41	blood
47	chr13:48511800-48531200	Weak transcription	HUVEC	blood vessel
48	chr13:48512000-48515200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr13:48512000-48515200	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr13:48512000-48516800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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