Variant report

Variant	rs7321885
Chromosome Location	chr13:95921168-95921169
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10508020	0.87[ASN][1000 genomes]
rs1317503	0.98[ASN][1000 genomes]
rs16950847	0.98[ASN][1000 genomes]
rs16952754	0.83[ASN][1000 genomes]
rs2389225	0.98[ASN][1000 genomes]
rs4148427	0.92[ASN][1000 genomes]
rs4148428	0.92[ASN][1000 genomes]
rs4148433	0.98[ASN][1000 genomes]
rs61972725	0.83[ASN][1000 genomes]
rs7319126	0.98[ASN][1000 genomes]
rs7321807	0.98[ASN][1000 genomes]
rs7324737	0.98[ASN][1000 genomes]
rs7336051	0.90[ASN][1000 genomes]
rs7337228	0.90[ASN][1000 genomes]
rs9590227	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv832689	chr13:95759073-95921308	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95880600-95922600	Weak transcription	Psoas Muscle	Psoas
2	chr13:95896200-95923400	Weak transcription	Ovary	ovary
3	chr13:95897000-95927400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr13:95908000-95926600	Weak transcription	Gastric	stomach
5	chr13:95910200-95927400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr13:95913600-95932800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr13:95916400-95922000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr13:95917000-95931400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr13:95918400-95923400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr13:95918800-95922800	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr13:95919000-95921200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr13:95919000-95922600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr13:95919000-95922800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr13:95919000-95923200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:95919000-95925600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr13:95919000-95930000	Weak transcription	Esophagus	oesophagus
17	chr13:95919200-95922800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr13:95919400-95921200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr13:95919400-95921200	Enhancers	NHLF	lung
20	chr13:95919400-95923200	Enhancers	HSMM	muscle
21	chr13:95919400-95923600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr13:95919400-95924200	Enhancers	Fetal Stomach	stomach
23	chr13:95919600-95921200	Enhancers	Lung	lung
24	chr13:95919600-95922000	Enhancers	Colon Smooth Muscle	Colon
25	chr13:95919600-95923000	Genic enhancers	K562	blood
26	chr13:95919600-95923400	Enhancers	Osteobl	bone
27	chr13:95919600-95924800	Enhancers	HUVEC	blood vessel
28	chr13:95919800-95921200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr13:95919800-95921200	Enhancers	Fetal Intestine Small	intestine
30	chr13:95919800-95922000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr13:95919800-95922600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr13:95919800-95923600	Weak transcription	Primary hematopoietic stem cells	blood
33	chr13:95919800-95924600	Enhancers	Rectal Smooth Muscle	rectum
34	chr13:95919800-95928000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr13:95920000-95923600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr13:95920000-95923600	Weak transcription	Duodenum Mucosa	Duodenum
37	chr13:95920200-95921200	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr13:95920200-95921400	Enhancers	HSMMtube	muscle
39	chr13:95920200-95921600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr13:95920200-95921800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr13:95920200-95922400	Enhancers	NHEK	skin
42	chr13:95920200-95922800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr13:95920200-95923600	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr13:95920200-95928800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr13:95920200-95952800	Weak transcription	Aorta	Aorta
46	chr13:95920400-95921200	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr13:95920400-95921200	Weak transcription	GM12878-XiMat	blood
48	chr13:95920400-95922800	Weak transcription	Fetal Intestine Large	intestine
49	chr13:95920400-95923000	Enhancers	NHDF-Ad	bronchial
50	chr13:95920400-95923400	Weak transcription	Brain Hippocampus Middle	brain

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