Variant report

Variant	rs9590227
Chromosome Location	chr13:95923125-95923126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95860458..95862000-chr13:95922105..95923828,2	K562	blood:
2	chr13:95922109..95924473-chr13:95936856..95939759,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10508020	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs11842634	0.89[EUR][1000 genomes]
rs11843001	0.89[EUR][1000 genomes]
rs1317503	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16950847	0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs2389225	0.84[CHD][hapmap];0.83[GIH][hapmap];0.89[JPT][hapmap];0.83[TSI][hapmap];0.92[ASN][1000 genomes]
rs3764050	0.88[JPT][hapmap]
rs4148427	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4148428	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4148430	0.82[CEU][hapmap]
rs4148432	0.85[CEU][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]
rs4148433	0.84[CHD][hapmap];0.83[GIH][hapmap];0.89[JPT][hapmap];0.83[TSI][hapmap];0.92[ASN][1000 genomes]
rs4148439	1.00[MEX][hapmap]
rs7317603	0.89[EUR][1000 genomes]
rs7318952	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7319126	0.92[ASN][1000 genomes]
rs7320375	0.85[CEU][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes]
rs7321807	0.84[CHD][hapmap];0.83[GIH][hapmap];0.89[JPT][hapmap];0.83[TSI][hapmap];0.92[ASN][1000 genomes]
rs7321885	0.94[ASN][1000 genomes]
rs7323283	1.00[EUR][1000 genomes]
rs7324737	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7325256	0.85[CEU][hapmap];0.83[TSI][hapmap]
rs7328332	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7329490	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7336051	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7337228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7986087	0.85[CEU][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]
rs871175	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95896200-95923400	Weak transcription	Ovary	ovary
2	chr13:95897000-95927400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr13:95908000-95926600	Weak transcription	Gastric	stomach
4	chr13:95910200-95927400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr13:95913600-95932800	Weak transcription	Primary B cells from peripheral blood	blood
6	chr13:95917000-95931400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr13:95918400-95923400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr13:95919000-95923200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:95919000-95925600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr13:95919000-95930000	Weak transcription	Esophagus	oesophagus
11	chr13:95919400-95923200	Enhancers	HSMM	muscle
12	chr13:95919400-95923600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr13:95919400-95924200	Enhancers	Fetal Stomach	stomach
14	chr13:95919600-95923400	Enhancers	Osteobl	bone
15	chr13:95919600-95924800	Enhancers	HUVEC	blood vessel
16	chr13:95919800-95923600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr13:95919800-95924600	Enhancers	Rectal Smooth Muscle	rectum
18	chr13:95919800-95928000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr13:95920000-95923600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr13:95920000-95923600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr13:95920200-95923600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr13:95920200-95928800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr13:95920200-95952800	Weak transcription	Aorta	Aorta
24	chr13:95920400-95923400	Weak transcription	Brain Hippocampus Middle	brain
25	chr13:95920400-95923400	Weak transcription	HepG2	liver
26	chr13:95920400-95923600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr13:95920400-95924400	Enhancers	NH-A	brain
28	chr13:95920400-95927400	Weak transcription	Hela-S3	cervix
29	chr13:95920600-95928200	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr13:95920800-95923200	Enhancers	Muscle Satellite Cultured Cells	--
31	chr13:95920800-95923400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr13:95920800-95925600	Weak transcription	Placenta	Placenta
33	chr13:95921000-95923200	Weak transcription	Fetal Kidney	kidney
34	chr13:95921000-95923600	Enhancers	Stomach Smooth Muscle	stomach
35	chr13:95921200-95923400	Weak transcription	Fetal Intestine Small	intestine
36	chr13:95921200-95925600	Weak transcription	Lung	lung
37	chr13:95921400-95926200	Weak transcription	Right Atrium	heart
38	chr13:95921600-95923600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr13:95921600-95923600	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr13:95921600-95924800	Enhancers	NHLF	lung
41	chr13:95921600-95927600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr13:95922000-95923200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr13:95922000-95924400	Enhancers	Fetal Lung	lung
44	chr13:95922200-95923200	Flanking Active TSS	A549	lung
45	chr13:95922200-95923400	Weak transcription	Brain Substantia Nigra	brain
46	chr13:95922200-95923400	Enhancers	HSMMtube	muscle
47	chr13:95922200-95926200	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr13:95922400-95923600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr13:95922400-95926200	Weak transcription	Small Intestine	intestine
50	chr13:95922400-95927600	Weak transcription	Brain Anterior Caudate	brain

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