Variant report

Variant	rs73223884
Chromosome Location	chr2:20308061-20308062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:20307655-20308276	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:20270622..20273512-chr2:20307983..20310075,2	MCF-7	breast:
2	chr2:20307981..20311026-chr2:20439655..20442386,3	MCF-7	breast:
3	chr2:20306020..20309024-chr2:20421635..20424090,4	MCF-7	breast:
4	chr2:20303170..20305756-chr2:20308003..20310603,2	MCF-7	breast:
5	chr2:20308045..20309593-chr2:20432810..20434500,2	MCF-7	breast:
6	chr2:20307232..20308797-chr2:20378092..20380183,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000234378	TF binding region
ENSG00000235411	Chromatin interaction
ENSG00000115884	Chromatin interaction

rs_ID	r²[population]
rs61418833	0.86[ASN][1000 genomes]
rs73223878	0.81[ASN][1000 genomes]
rs73223879	0.81[ASN][1000 genomes]
rs73223886	0.95[ASN][1000 genomes]
rs73223888	0.92[ASN][1000 genomes]

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20304800-20308600	Weak transcription	Liver	Liver
2	chr2:20305200-20308600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr2:20305800-20310200	Weak transcription	Gastric	stomach
4	chr2:20306000-20308600	Weak transcription	Stomach Mucosa	stomach
5	chr2:20306600-20318400	Enhancers	Placenta	Placenta
6	chr2:20306800-20311200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr2:20306800-20318200	Weak transcription	Right Ventricle	heart
8	chr2:20307000-20308200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr2:20307000-20308600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr2:20307000-20309000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:20307000-20310200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr2:20307000-20310200	Enhancers	HMEC	breast
13	chr2:20307000-20311200	Weak transcription	Esophagus	oesophagus
14	chr2:20307000-20311200	Weak transcription	Pancreas	Pancrea
15	chr2:20307200-20308600	Weak transcription	Fetal Intestine Large	intestine
16	chr2:20307200-20308600	Enhancers	HepG2	liver
17	chr2:20307200-20309200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:20307400-20308600	Weak transcription	Fetal Intestine Small	intestine
19	chr2:20307600-20308600	Enhancers	A549	lung
20	chr2:20307600-20308600	Weak transcription	NHEK	skin
21	chr2:20307600-20309000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr2:20307800-20308800	Weak transcription	NHDF-Ad	bronchial
23	chr2:20307800-20310200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr2:20308000-20308400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr2:20308000-20308400	Weak transcription	NHLF	lung
26	chr2:20308000-20310600	Weak transcription	K562	blood
27	chr2:20308000-20322200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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