Variant report

Variant	rs73223879
Chromosome Location	chr2:20303560-20303561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:20302794..20305910-chr2:20337863..20340597,3	MCF-7	breast:
2	chr2:20303170..20305756-chr2:20308003..20310603,2	MCF-7	breast:
3	chr2:20301825..20304525-chr2:20380174..20381913,2	MCF-7	breast:
4	chr2:20301755..20305316-chr2:20309151..20312503,4	MCF-7	breast:
5	chr2:20302713..20305705-chr2:20312784..20315987,4	MCF-7	breast:
6	chr2:20299695..20307724-chr2:20421846..20426859,15	MCF-7	breast:
7	chr2:20214302..20217183-chr2:20301641..20303761,2	MCF-7	breast:
8	chr2:20302206..20305346-chr2:20423649..20425434,3	MCF-7	breast:
9	chr2:20250364..20252626-chr2:20300764..20304294,3	MCF-7	breast:
10	chr2:20300369..20303595-chr2:20430836..20433984,3	MCF-7	breast:
11	chr2:20290689..20292864-chr2:20300791..20304475,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16987357	0.87[ASN][1000 genomes]
rs16987368	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16987372	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2881878	0.82[ASN][1000 genomes]
rs34481015	0.82[AFR][1000 genomes]
rs60625753	0.82[ASN][1000 genomes]
rs60728964	0.87[ASN][1000 genomes]
rs61418833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73223864	0.87[ASN][1000 genomes]
rs73223866	0.87[ASN][1000 genomes]
rs73223878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223884	0.81[ASN][1000 genomes]
rs73223886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73223888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20293600-20304200	Weak transcription	Stomach Mucosa	stomach
2	chr2:20294000-20304400	Weak transcription	Pancreas	Pancrea
3	chr2:20298400-20307800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:20300000-20303600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:20301200-20306400	Weak transcription	HUVEC	blood vessel
6	chr2:20301800-20304600	Weak transcription	Placenta	Placenta
7	chr2:20303400-20304800	Enhancers	Liver	Liver
8	chr2:20303400-20306400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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