Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:20248757..20252967-chr2:20277280..20285105,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000223734	Chromatin interaction
ENSG00000068697	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10178084	0.80[AMR][1000 genomes]
rs10181363	0.80[AMR][1000 genomes]
rs10192770	0.80[AMR][1000 genomes]
rs10193138	0.80[AMR][1000 genomes]
rs10201596	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs11096636	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs13400037	0.80[AMR][1000 genomes]
rs13400145	0.80[AMR][1000 genomes]
rs13413192	0.80[AMR][1000 genomes]
rs1466418	0.80[AMR][1000 genomes]
rs1513833	0.80[AMR][1000 genomes]
rs16987337	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap]
rs16987357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16987368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs16987372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs56154480	0.89[EUR][1000 genomes]
rs60625753	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60728964	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73223843	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73223864	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73223866	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73223878	0.82[ASN][1000 genomes]
rs73223879	0.82[ASN][1000 genomes]
rs7602766	1.00[CEU][hapmap];0.82[CHB][hapmap]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20280800-20291000	Weak transcription	A549	lung
2	chr2:20281200-20291200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:20282000-20288600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:20282200-20285400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:20282200-20286000	Weak transcription	HSMMtube	muscle
6	chr2:20282200-20288400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:20282200-20289000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr2:20282200-20289200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:20282200-20289600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:20282400-20290000	Weak transcription	Fetal Muscle Leg	muscle
11	chr2:20282400-20290400	Weak transcription	Placenta	Placenta
12	chr2:20282800-20290600	Weak transcription	Hela-S3	cervix
13	chr2:20283800-20285200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr2:20283800-20286200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr2:20284200-20285200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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