Variant report

Variant	rs10193138
Chromosome Location	chr2:20275731-20275732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10178084	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10181363	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10192770	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1028052	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1028053	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13400037	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13400145	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13413192	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1466418	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1513833	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2881878	0.80[AMR][1000 genomes]
rs57629483	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59501686	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73223845	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73223848	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs967502	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20272000-20280600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:20272400-20277200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:20273000-20277000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr2:20273000-20279600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:20273200-20281800	Weak transcription	Hela-S3	cervix
6	chr2:20274200-20275800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr2:20274200-20276600	Weak transcription	Fetal Intestine Small	intestine
8	chr2:20274200-20281800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:20274400-20278000	Enhancers	HepG2	liver
10	chr2:20274600-20280600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr2:20275000-20277400	Weak transcription	Placenta	Placenta
12	chr2:20275000-20278000	Weak transcription	Left Ventricle	heart
13	chr2:20275000-20280000	Weak transcription	K562	blood
14	chr2:20275000-20280200	Weak transcription	Ovary	ovary
15	chr2:20275000-20280200	Weak transcription	Pancreas	Pancrea
16	chr2:20275000-20280400	Weak transcription	Spleen	Spleen
17	chr2:20275200-20276200	Weak transcription	Fetal Muscle Leg	muscle
18	chr2:20275200-20280600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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