Variant report

Variant	rs1466418
Chromosome Location	chr2:20274903-20274904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:20269147..20275842-chr2:20291951..20298996,12	MCF-7	breast:
2	chr2:20273188..20275135-chr2:20424139..20425783,2	MCF-7	breast:
3	chr2:20250004..20252978-chr2:20274780..20276843,3	MCF-7	breast:
4	chr2:20274646..20276841-chr2:20278881..20281593,3	K562	blood:
5	chr2:20271820..20275999-chr2:20291191..20294413,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115884	Chromatin interaction
ENSG00000068697	Chromatin interaction
ENSG00000223734	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10178084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.86[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10181363	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10192770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10193138	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1028052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1028053	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13400037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13400145	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13413192	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1513833	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2881878	0.80[AMR][1000 genomes]
rs57629483	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59501686	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73223845	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73223848	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs967502	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20267200-20275000	Enhancers	Placenta	Placenta
2	chr2:20270000-20275200	Enhancers	Fetal Muscle Leg	muscle
3	chr2:20271000-20275000	Enhancers	Pancreas	Pancrea
4	chr2:20271200-20275000	Enhancers	Left Ventricle	heart
5	chr2:20272000-20280600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr2:20272200-20275000	Enhancers	Ovary	ovary
7	chr2:20272400-20275000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr2:20272400-20277200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:20272600-20275000	Enhancers	Right Atrium	heart
10	chr2:20272600-20275000	Enhancers	Right Ventricle	heart
11	chr2:20273000-20277000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr2:20273000-20279600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:20273200-20281800	Weak transcription	Hela-S3	cervix
14	chr2:20273800-20275000	Enhancers	Spleen	Spleen
15	chr2:20274000-20275000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr2:20274200-20275800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr2:20274200-20276600	Weak transcription	Fetal Intestine Small	intestine
18	chr2:20274200-20281800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr2:20274400-20275000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr2:20274400-20275000	Enhancers	K562	blood
21	chr2:20274400-20275200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr2:20274400-20275200	Enhancers	Fetal Heart	heart
23	chr2:20274400-20278000	Enhancers	HepG2	liver
24	chr2:20274600-20275000	Enhancers	Lung	lung
25	chr2:20274600-20280600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr2:20274800-20275000	Enhancers	NHDF-Ad	bronchial

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