Variant report

Variant	rs1513833
Chromosome Location	chr2:20274303-20274304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:20213655..20215850-chr2:20273111..20274656,2	MCF-7	breast:
2	chr2:20269147..20275842-chr2:20291951..20298996,12	MCF-7	breast:
3	chr2:20273188..20275135-chr2:20424139..20425783,2	MCF-7	breast:
4	chr2:20249788..20257046-chr2:20268868..20274735,23	MCF-7	breast:
5	chr2:20271820..20275999-chr2:20291191..20294413,6	MCF-7	breast:
6	chr2:20210963..20214277-chr2:20270799..20274323,4	MCF-7	breast:
7	chr2:20097715..20099626-chr2:20272846..20274407,2	K562	blood:

Variant related genes	Relation type
ENSG00000183891	Chromatin interaction
ENSG00000068697	Chromatin interaction
ENSG00000132031	Chromatin interaction
ENSG00000115884	Chromatin interaction
ENSG00000223734	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10178084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10181363	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10192770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10193138	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1028052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1028053	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13400037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13400145	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13413192	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1466418	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2881878	0.80[AMR][1000 genomes]
rs57629483	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59501686	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73223845	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73223848	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs967502	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20267200-20275000	Enhancers	Placenta	Placenta
2	chr2:20270000-20275200	Enhancers	Fetal Muscle Leg	muscle
3	chr2:20271000-20275000	Enhancers	Pancreas	Pancrea
4	chr2:20271200-20275000	Enhancers	Left Ventricle	heart
5	chr2:20272000-20274400	Enhancers	NHEK	skin
6	chr2:20272000-20280600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr2:20272200-20274400	Enhancers	Adipose Nuclei	Adipose
8	chr2:20272200-20274400	Enhancers	Fetal Lung	lung
9	chr2:20272200-20275000	Enhancers	Ovary	ovary
10	chr2:20272400-20274400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:20272400-20275000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr2:20272400-20277200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr2:20272600-20275000	Enhancers	Right Atrium	heart
14	chr2:20272600-20275000	Enhancers	Right Ventricle	heart
15	chr2:20273000-20277000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr2:20273000-20279600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:20273200-20274400	Weak transcription	Colon Smooth Muscle	Colon
18	chr2:20273200-20281800	Weak transcription	Hela-S3	cervix
19	chr2:20273400-20274800	Weak transcription	NHDF-Ad	bronchial
20	chr2:20273600-20274400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr2:20273600-20274400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr2:20273800-20274400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr2:20273800-20274400	Flanking Active TSS	HepG2	liver
24	chr2:20273800-20274400	Flanking Active TSS	K562	blood
25	chr2:20273800-20274600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr2:20273800-20275000	Enhancers	Spleen	Spleen
27	chr2:20274000-20274400	Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr2:20274000-20274400	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr2:20274000-20274400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr2:20274000-20274400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
31	chr2:20274000-20274400	Flanking Active TSS	Fetal Heart	heart
32	chr2:20274000-20274400	Enhancers	Lung	lung
33	chr2:20274000-20275000	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr2:20274200-20274400	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr2:20274200-20274600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr2:20274200-20274800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr2:20274200-20275800	Weak transcription	Fetal Muscle Trunk	muscle
38	chr2:20274200-20276600	Weak transcription	Fetal Intestine Small	intestine
39	chr2:20274200-20281800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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