Variant report

No.	Distal block	Cell Line	Cell type
1	chr2:20278085..20279898-chr2:20286384..20289242,2	MCF-7	breast:
2	chr2:20277155..20282170-chr2:20290246..20293600,5	MCF-7	breast:
3	chr2:20270221..20272820-chr2:20277699..20279389,2	K562	blood:
4	chr2:20248757..20252967-chr2:20277280..20285105,10	MCF-7	breast:
5	chr2:20274646..20276841-chr2:20278881..20281593,3	K562	blood:
6	chr2:20249786..20253556-chr2:20278179..20282611,6	MCF-7	breast:
7	chr2:20276734..20283198-chr2:20287354..20293786,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000223734	Chromatin interaction
ENSG00000068697	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10178084	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10181363	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10192770	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10193138	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1028052	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1028053	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13400037	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13400145	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13413192	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1466418	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1513833	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16987357	0.83[AMR][1000 genomes]
rs57629483	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60625753	0.83[AMR][1000 genomes]
rs60728964	0.83[AMR][1000 genomes]
rs73223843	0.83[AMR][1000 genomes]
rs73223845	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73223848	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73223864	0.83[AMR][1000 genomes]
rs73223866	0.83[AMR][1000 genomes]
rs967502	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20272000-20280600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:20273000-20279600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:20273200-20281800	Weak transcription	Hela-S3	cervix
4	chr2:20274200-20281800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:20274600-20280600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr2:20275000-20280000	Weak transcription	K562	blood
7	chr2:20275000-20280200	Weak transcription	Ovary	ovary
8	chr2:20275000-20280200	Weak transcription	Pancreas	Pancrea
9	chr2:20275000-20280400	Weak transcription	Spleen	Spleen
10	chr2:20275200-20280600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr2:20277400-20282400	Enhancers	Placenta	Placenta
12	chr2:20278000-20280200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr2:20279000-20280600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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