Variant report

Variant	rs60625753
Chromosome Location	chr2:20281292-20281293
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:20280896..20282415-chr2:20296609..20299521,2	K562	blood:
2	chr2:20277155..20282170-chr2:20290246..20293600,5	MCF-7	breast:
3	chr2:20254933..20256660-chr2:20280504..20283208,2	MCF-7	breast:
4	chr2:20248757..20252967-chr2:20277280..20285105,10	MCF-7	breast:
5	chr2:20274646..20276841-chr2:20278881..20281593,3	K562	blood:
6	chr2:20249878..20252203-chr2:20279572..20281850,2	K562	blood:
7	chr2:20249786..20253556-chr2:20278179..20282611,6	MCF-7	breast:
8	chr2:20276734..20283198-chr2:20287354..20293786,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000223734	Chromatin interaction
ENSG00000068697	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16987337	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs16987357	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16987368	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16987372	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2881878	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56154480	0.89[EUR][1000 genomes]
rs56887453	0.80[AMR][1000 genomes]
rs59501686	0.83[AMR][1000 genomes]
rs60728964	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73222147	0.80[AMR][1000 genomes]
rs73223843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73223845	0.83[AMR][1000 genomes]
rs73223864	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73223866	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73223878	0.82[ASN][1000 genomes]
rs73223879	0.82[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20273200-20281800	Weak transcription	Hela-S3	cervix
2	chr2:20274200-20281800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:20277400-20282400	Enhancers	Placenta	Placenta
4	chr2:20279600-20281400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:20279600-20282000	Enhancers	Fetal Muscle Trunk	muscle
6	chr2:20279600-20282200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:20280200-20282000	Enhancers	Ovary	ovary
8	chr2:20280200-20282000	Enhancers	Pancreas	Pancrea
9	chr2:20280200-20282200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr2:20280200-20282400	Enhancers	Fetal Muscle Leg	muscle
11	chr2:20280400-20282000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:20280400-20282000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr2:20280400-20282000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr2:20280600-20282000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr2:20280600-20282200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr2:20280600-20282200	Enhancers	HSMMtube	muscle
17	chr2:20280800-20281400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr2:20280800-20282000	Enhancers	Brain Germinal Matrix	brain
19	chr2:20280800-20291000	Weak transcription	A549	lung
20	chr2:20281000-20282000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr2:20281200-20281600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr2:20281200-20281800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr2:20281200-20281800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr2:20281200-20282000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr2:20281200-20282000	Weak transcription	Fetal Lung	lung
26	chr2:20281200-20282200	Bivalent Enhancer	HepG2	liver
27	chr2:20281200-20291200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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