Variant report

Variant	rs56887453
Chromosome Location	chr2:20257990-20257991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000068697	Chromatin interaction
ENSG00000271991	Chromatin interaction
ENSG00000183891	Chromatin interaction
ENSG00000223734	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10201596	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11096636	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13406536	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16987337	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16987357	0.80[AMR][1000 genomes]
rs3731672	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56154480	0.89[EUR][1000 genomes]
rs60625753	0.80[AMR][1000 genomes]
rs60728964	0.80[AMR][1000 genomes]
rs73222147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223843	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73223864	0.80[AMR][1000 genomes]
rs73223866	0.80[AMR][1000 genomes]
rs7602766	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20252000-20261400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:20252400-20266000	Weak transcription	Pancreas	Pancrea
3	chr2:20253200-20264400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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