Variant report

Variant	rs3731672
Chromosome Location	chr2:20240464-20240465
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:20239516..20241973-chr2:20242633..20244328,2	MCF-7	breast:
2	chr2:20239173..20241754-chr3:122981267..122982914,2	MCF-7	breast:
3	chr2:20233000..20234646-chr2:20240342..20243953,3	MCF-7	breast:
4	chr2:20239886..20242737-chr2:20245046..20246984,2	K562	blood:
5	chr2:20236235..20238092-chr2:20238674..20240856,2	MCF-7	breast:
6	chr2:20226527..20228627-chr2:20238902..20240937,2	K562	blood:
7	chr2:20235025..20246171-chr2:20248104..20254249,17	MCF-7	breast:
8	chr2:20239345..20241750-chr2:20293079..20295990,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000223734	Chromatin interaction
ENSG00000068697	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10201596	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11096636	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13406536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16987337	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56154480	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56887453	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73222147	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7602766	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20221400-20249800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:20225400-20240600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:20227000-20240600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:20227000-20240800	Strong transcription	Placenta	Placenta
5	chr2:20227000-20241000	Strong transcription	Liver	Liver
6	chr2:20227000-20242000	Strong transcription	Primary T cells from cord blood	blood
7	chr2:20227000-20242400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr2:20227200-20240800	Strong transcription	Fetal Lung	lung
9	chr2:20227200-20241000	Strong transcription	Fetal Thymus	thymus
10	chr2:20227200-20242200	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr2:20227400-20240800	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr2:20227400-20240800	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr2:20227400-20240800	Strong transcription	Duodenum Smooth Muscle	Duodenum
14	chr2:20227600-20241000	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr2:20227800-20241200	Strong transcription	Fetal Intestine Large	intestine
16	chr2:20227800-20242200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr2:20228000-20240600	Strong transcription	Skeletal Muscle Male	skeletal muscle
18	chr2:20228000-20242000	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr2:20228200-20240800	Strong transcription	H1 Cell Line	embryonic stem cell
20	chr2:20228200-20240800	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr2:20228200-20242600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr2:20228400-20240800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr2:20228400-20241400	Strong transcription	Dnd41	blood
24	chr2:20228800-20240800	Strong transcription	Brain Anterior Caudate	brain
25	chr2:20229600-20240800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr2:20229800-20240600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr2:20229800-20240800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr2:20229800-20241400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr2:20230000-20242200	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr2:20230200-20240600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr2:20230200-20240600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr2:20230200-20241600	Strong transcription	HepG2	liver
33	chr2:20230200-20241800	Strong transcription	Fetal Muscle Trunk	muscle
34	chr2:20230200-20242200	Strong transcription	Fetal Brain Female	brain
35	chr2:20230400-20240800	Strong transcription	Brain Germinal Matrix	brain
36	chr2:20230400-20241400	Strong transcription	A549	lung
37	chr2:20230400-20241600	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr2:20230400-20242200	Strong transcription	Fetal Muscle Leg	muscle
39	chr2:20230600-20242600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr2:20230600-20248000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr2:20230800-20240800	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr2:20230800-20241200	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr2:20232200-20240600	Strong transcription	Brain Hippocampus Middle	brain
44	chr2:20232800-20241600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr2:20233000-20240600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr2:20233200-20240800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr2:20233200-20240800	Strong transcription	H9 Cell Line	embryonic stem cell
48	chr2:20233200-20240800	Strong transcription	Fetal Stomach	stomach
49	chr2:20233200-20241400	Strong transcription	Thymus	Thymus
50	chr2:20234800-20248200	Weak transcription	Psoas Muscle	Psoas

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