Variant report

Variant	rs16987337
Chromosome Location	chr2:20262458-20262459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:20260254..20262852-chr2:20267314..20269443,2	K562	blood:
2	chr2:20250276..20253096-chr2:20260754..20262573,2	K562	blood:
3	chr2:20211404..20214064-chr2:20260453..20262508,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000132031	Chromatin interaction
ENSG00000068697	Chromatin interaction
ENSG00000223734	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10201596	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11096636	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13406536	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16987357	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.86[YRI][hapmap];0.80[AMR][1000 genomes]
rs16987368	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.86[YRI][hapmap]
rs16987372	1.00[CEU][hapmap];0.86[JPT][hapmap];0.86[YRI][hapmap]
rs2881878	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap]
rs3731672	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56154480	0.89[EUR][1000 genomes]
rs56887453	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60625753	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs60728964	0.80[AMR][1000 genomes]
rs73222147	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223843	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73223864	0.80[AMR][1000 genomes]
rs73223866	0.80[AMR][1000 genomes]
rs7602766	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20252400-20266000	Weak transcription	Pancreas	Pancrea
2	chr2:20253200-20264400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:20260600-20262800	Enhancers	NHDF-Ad	bronchial
4	chr2:20260600-20264200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr2:20260600-20266600	Enhancers	Fetal Muscle Leg	muscle
6	chr2:20261000-20262800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:20261200-20262600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:20261200-20262600	Enhancers	NH-A	brain
9	chr2:20261200-20262800	Enhancers	Colon Smooth Muscle	Colon
10	chr2:20261400-20262600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:20261400-20262600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr2:20261400-20262800	Enhancers	NHLF	lung
13	chr2:20261400-20263200	Enhancers	Fetal Stomach	stomach
14	chr2:20261400-20263400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr2:20261400-20265600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr2:20261600-20262600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr2:20261600-20262800	Enhancers	Adipose Nuclei	Adipose
18	chr2:20261600-20263200	Enhancers	Stomach Smooth Muscle	stomach
19	chr2:20261600-20263400	Enhancers	HSMM	muscle
20	chr2:20261800-20262600	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr2:20261800-20262800	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr2:20261800-20263400	Enhancers	Rectal Smooth Muscle	rectum
23	chr2:20261800-20266800	Enhancers	Placenta	Placenta
24	chr2:20262000-20262800	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr2:20262000-20265600	Enhancers	HepG2	liver
26	chr2:20262200-20262600	Flanking Active TSS	Osteobl	bone
27	chr2:20262200-20262800	Enhancers	Fetal Lung	lung
28	chr2:20262200-20262800	Enhancers	HSMMtube	muscle
29	chr2:20262200-20265600	Weak transcription	Colonic Mucosa	Colon
30	chr2:20262200-20265800	Weak transcription	Right Ventricle	heart
31	chr2:20262400-20263400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr2:20262400-20263400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr2:20262400-20263400	Weak transcription	Fetal Muscle Trunk	muscle
34	chr2:20262400-20264000	Weak transcription	Placenta Amnion	Placenta Amnion

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