Variant report

Variant	rs16987368
Chromosome Location	chr2:20299854-20299855
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10201596	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs11096636	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs16987337	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.86[YRI][hapmap]
rs16987357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16987372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2881878	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs60625753	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs60728964	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61418833	0.82[EUR][1000 genomes]
rs73223843	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73223864	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73223866	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73223878	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73223879	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73223886	0.88[EUR][1000 genomes]
rs73223888	0.88[EUR][1000 genomes]
rs7602766	1.00[CEU][hapmap];0.82[CHB][hapmap]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20291000-20300000	Weak transcription	Right Atrium	heart
2	chr2:20292000-20300400	Weak transcription	HUVEC	blood vessel
3	chr2:20293600-20304200	Weak transcription	Stomach Mucosa	stomach
4	chr2:20294000-20304400	Weak transcription	Pancreas	Pancrea
5	chr2:20294400-20300200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr2:20298000-20303000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:20298400-20307800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:20299600-20300000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:20299600-20301000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:20299600-20301800	Enhancers	Placenta	Placenta
11	chr2:20299800-20301400	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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