Variant report

Variant	rs7323257
Chromosome Location	chr13:96197564-96197565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4771919	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs962320	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96188000-96199600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr13:96188400-96198800	Weak transcription	Hela-S3	cervix
3	chr13:96189600-96198800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr13:96189800-96199000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr13:96193800-96198800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr13:96194200-96199600	Weak transcription	A549	lung
7	chr13:96194600-96204200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr13:96194600-96204200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr13:96197000-96199000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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