Variant report

Variant	rs962320
Chromosome Location	chr13:96193889-96193890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4143093	0.91[CEU][hapmap]
rs4771919	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7323257	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs962320	UGCGL2	cis	multi-tissue	Pritchard

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96188000-96199600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr13:96188400-96198800	Weak transcription	Hela-S3	cervix
3	chr13:96189600-96198800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr13:96189800-96199000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr13:96192600-96194600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr13:96192600-96194600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr13:96192600-96194600	Enhancers	Pancreas	Pancrea
8	chr13:96192600-96195000	Enhancers	Fetal Muscle Leg	muscle
9	chr13:96192800-96194200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr13:96192800-96194400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr13:96192800-96194400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr13:96192800-96194600	Enhancers	Fetal Heart	heart
13	chr13:96193000-96194000	Enhancers	Fetal Kidney	kidney
14	chr13:96193000-96194200	Enhancers	A549	lung
15	chr13:96193000-96194400	Enhancers	HSMM	muscle
16	chr13:96193200-96194000	Enhancers	Brain Angular Gyrus	brain
17	chr13:96193200-96194000	Enhancers	Fetal Lung	lung
18	chr13:96193200-96194600	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr13:96193200-96194600	Enhancers	Primary hematopoietic stem cells	blood
20	chr13:96193200-96194600	Enhancers	Psoas Muscle	Psoas
21	chr13:96193200-96194600	Enhancers	HUVEC	blood vessel
22	chr13:96193400-96194400	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr13:96193600-96194000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr13:96193600-96194200	Enhancers	Brain Substantia Nigra	brain
25	chr13:96193600-96194600	Enhancers	HSMMtube	muscle
26	chr13:96193800-96194400	Weak transcription	Brain Anterior Caudate	brain
27	chr13:96193800-96195400	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr13:96193800-96198800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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