Variant report

Variant	rs73232752
Chromosome Location	chr3:142582330-142582331
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:142554457..142556627-chr3:142580536..142582345,2	K562	blood:
2	chr3:142572989..142577563-chr3:142579302..142583186,5	MCF-7	breast:
3	chr3:142574348..142577534-chr3:142580497..142583150,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17625196	1.00[AFR][1000 genomes]
rs73157664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73232723	1.00[AMR][1000 genomes]
rs73232754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73232771	1.00[AFR][1000 genomes]
rs73234752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142572800-142596200	Weak transcription	Aorta	Aorta
2	chr3:142573000-142582400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:142575600-142590800	Weak transcription	Right Atrium	heart
4	chr3:142579800-142583000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:142581000-142584000	Enhancers	Dnd41	blood
6	chr3:142581200-142582400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:142581200-142585000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:142581800-142582400	Enhancers	HMEC	breast
9	chr3:142581800-142582600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:142581800-142583200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:142581800-142583400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:142581800-142583600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:142581800-142583600	Enhancers	H9 Cell Line	embryonic stem cell
14	chr3:142582000-142582400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr3:142582000-142582400	Enhancers	NHDF-Ad	bronchial
16	chr3:142582000-142582600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr3:142582000-142582600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
18	chr3:142582000-142582600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:142582000-142582600	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr3:142582000-142582600	Enhancers	Adipose Nuclei	Adipose
21	chr3:142582000-142582600	Enhancers	Fetal Thymus	thymus
22	chr3:142582000-142582600	Enhancers	Left Ventricle	heart
23	chr3:142582000-142582600	Enhancers	HSMM	muscle
24	chr3:142582000-142583000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
25	chr3:142582000-142583000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr3:142582000-142583000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:142582000-142583000	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr3:142582000-142583000	Enhancers	Primary T cells from cord blood	blood
29	chr3:142582000-142583000	Enhancers	Placenta	Placenta
30	chr3:142582000-142583200	Enhancers	NH-A	brain
31	chr3:142582000-142583200	Flanking Active TSS	Osteobl	bone
32	chr3:142582000-142583600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr3:142582000-142583800	Enhancers	H1 Cell Line	embryonic stem cell
34	chr3:142582200-142582400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
35	chr3:142582200-142582400	Enhancers	A549	lung
36	chr3:142582200-142582600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
37	chr3:142582200-142582600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr3:142582200-142582600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr3:142582200-142582600	Enhancers	Liver	Liver
40	chr3:142582200-142582600	Enhancers	Monocytes-CD14+_RO01746	blood
41	chr3:142582200-142582600	Flanking Active TSS	NHEK	skin
42	chr3:142582200-142583000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
43	chr3:142582200-142583000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr3:142582200-142583000	Flanking Active TSS	Hela-S3	cervix
45	chr3:142582200-142583200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr3:142582200-142583200	Enhancers	Fetal Brain Male	brain
47	chr3:142582200-142583800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
48	chr3:142582200-142583800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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