Variant report

Variant	rs73234413
Chromosome Location	chr5:118160146-118160147
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs6865944	0.85[AFR][1000 genomes]
rs6885790	1.00[AFR][1000 genomes]
rs73236915	1.00[AFR][1000 genomes]
rs73236917	1.00[AFR][1000 genomes]
rs73236949	1.00[AFR][1000 genomes]
rs73236960	0.92[AFR][1000 genomes]
rs73236990	0.92[AFR][1000 genomes]
rs73239009	0.92[AFR][1000 genomes]
rs73239058	0.92[AFR][1000 genomes]
rs73239083	0.81[AFR][1000 genomes]
rs7716337	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv599562	chr5:118122504-118230640	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118143400-118178200	Weak transcription	Left Ventricle	heart
2	chr5:118158200-118176400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:118158400-118169200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:118158800-118160200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr5:118159600-118160200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:118159800-118160200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr5:118159800-118161800	Enhancers	Fetal Heart	heart
8	chr5:118160000-118160200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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