Variant report

Variant	rs73239058
Chromosome Location	chr5:118254745-118254746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs6885790	0.92[AFR][1000 genomes]
rs73234413	0.92[AFR][1000 genomes]
rs73236915	0.92[AFR][1000 genomes]
rs73236917	0.92[AFR][1000 genomes]
rs73236949	0.92[AFR][1000 genomes]
rs73236960	1.00[AFR][1000 genomes]
rs73236990	1.00[AFR][1000 genomes]
rs73239009	1.00[AFR][1000 genomes]
rs73239083	0.89[AFR][1000 genomes]
rs7716337	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118225400-118300400	Weak transcription	Primary B cells from cord blood	blood
2	chr5:118227400-118270600	Weak transcription	Ovary	ovary
3	chr5:118233400-118259000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:118233800-118289200	Weak transcription	Psoas Muscle	Psoas
5	chr5:118239400-118257000	Weak transcription	Fetal Lung	lung
6	chr5:118243600-118265000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr5:118244000-118279600	Weak transcription	Liver	Liver
8	chr5:118244000-118287400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr5:118245000-118260400	Weak transcription	Brain Anterior Caudate	brain
10	chr5:118245000-118272200	Weak transcription	Aorta	Aorta
11	chr5:118245600-118262200	Weak transcription	Primary T cells from cord blood	blood
12	chr5:118246600-118266800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:118250000-118261600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr5:118250400-118257600	Weak transcription	Fetal Kidney	kidney
15	chr5:118250400-118289400	Weak transcription	Primary B cells from peripheral blood	blood
16	chr5:118250600-118254800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr5:118251200-118254800	Weak transcription	Colon Smooth Muscle	Colon
18	chr5:118252000-118279000	Weak transcription	Left Ventricle	heart
19	chr5:118253200-118280200	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr5:118253400-118279200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr5:118253600-118255200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr5:118253800-118258400	Weak transcription	K562	blood
23	chr5:118254000-118255000	Enhancers	Fetal Thymus	thymus
24	chr5:118254000-118279800	Weak transcription	Pancreas	Pancrea
25	chr5:118254200-118255400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr5:118254400-118254800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr5:118254400-118255400	Genic enhancers	HUES6 Cell Line	embryonic stem cell
28	chr5:118254400-118255600	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr5:118254600-118254800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr5:118254600-118255200	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr5:118254600-118255200	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr5:118254600-118255600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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