Variant report

Variant	rs73236302
Chromosome Location	chr4:19859776-19859777
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16869049	0.88[EUR][1000 genomes]
rs58326174	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6833091	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6857620	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73236217	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73240130	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73240168	0.88[EUR][1000 genomes]
rs73241930	0.82[EUR][1000 genomes]
rs73241954	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv529290	chr4:19658583-20173839	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv593790	chr4:19740879-20142039	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2752044	chr4:19788263-20126804	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv878735	chr4:19810878-19933069	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv1830614	chr4:19840731-19875509	Weak transcription Enhancers Active TSS	lncRNA	n/a	inside rSNPs	diseases
7	esv13594	chr4:19858388-19864369	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv1829772	chr4:19858413-19863931	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv1830548	chr4:19858413-19863931	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
10	esv1830726	chr4:19858413-19863931	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
11	esv1830735	chr4:19858413-19863931	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv1827242	chr4:19858413-19864321	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
13	esv1827690	chr4:19858413-19864321	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
14	esv1828741	chr4:19858413-19864321	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv1829737	chr4:19858413-19864321	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
16	esv1830670	chr4:19858413-19864321	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
17	esv1831690	chr4:19858413-19864321	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
18	esv1831930	chr4:19858413-19864321	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
19	esv1833392	chr4:19858413-19864321	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19859000-19860000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:19859000-19860200	Enhancers	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links