Variant report

Variant	rs73240130
Chromosome Location	chr4:19949015-19949016
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16869049	1.00[EUR][1000 genomes]
rs58326174	0.82[EUR][1000 genomes]
rs6833091	0.82[EUR][1000 genomes]
rs6857620	0.82[EUR][1000 genomes]
rs73236302	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73240168	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73241930	0.94[EUR][1000 genomes]
rs73241954	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529290	chr4:19658583-20173839	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv593790	chr4:19740879-20142039	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2752044	chr4:19788263-20126804	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1003707	chr4:19898883-19963213	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
5	nsv1005430	chr4:19932874-20013705	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
6	nsv999227	chr4:19948910-19975405	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19946400-19949800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:19946600-19949800	Enhancers	NHLF	lung
3	chr4:19946800-19949600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:19946800-19949600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr4:19947600-19950000	Enhancers	NHDF-Ad	bronchial
6	chr4:19947800-19949600	Enhancers	NH-A	brain
7	chr4:19947800-19950000	Enhancers	Osteobl	bone
8	chr4:19948400-19950000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:19948600-19949800	Weak transcription	NHEK	skin
10	chr4:19948800-19949600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:19949000-19949200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:19949000-19949200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:19949000-19950000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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