Variant report

Variant	rs7323645
Chromosome Location	chr13:50486006-50486007
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1086510	1.00[EUR][1000 genomes]
rs1241386	1.00[EUR][1000 genomes]
rs2252794	1.00[EUR][1000 genomes]
rs2472595	1.00[EUR][1000 genomes]
rs2740536	1.00[EUR][1000 genomes]
rs2760916	1.00[EUR][1000 genomes]
rs2760917	1.00[EUR][1000 genomes]
rs56794415	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58364236	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58438849	1.00[EUR][1000 genomes]
rs58450365	1.00[EUR][1000 genomes]
rs59609469	1.00[EUR][1000 genomes]
rs60016474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61384266	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs706607	1.00[EUR][1000 genomes]
rs706612	1.00[EUR][1000 genomes]
rs7330228	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7336462	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73494087	1.00[EUR][1000 genomes]
rs790936	1.00[EUR][1000 genomes]
rs790938	1.00[EUR][1000 genomes]
rs7992306	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1851738	chr13:50474326-50507944	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50476400-50497400	Weak transcription	Pancreas	Pancrea
2	chr13:50477800-50499600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr13:50478000-50487200	Weak transcription	Ovary	ovary
4	chr13:50478000-50495200	Weak transcription	Brain Hippocampus Middle	brain
5	chr13:50478600-50491400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr13:50479200-50489600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr13:50479400-50490600	Weak transcription	Esophagus	oesophagus
8	chr13:50479600-50508600	Weak transcription	K562	blood
9	chr13:50479800-50500000	Weak transcription	Colon Smooth Muscle	Colon
10	chr13:50480800-50508800	Weak transcription	Fetal Brain Male	brain
11	chr13:50481400-50486200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr13:50481400-50489600	Weak transcription	Fetal Intestine Large	intestine
13	chr13:50481800-50509600	Weak transcription	Right Ventricle	heart
14	chr13:50482000-50488000	Weak transcription	A549	lung
15	chr13:50482200-50486200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr13:50482200-50486200	Weak transcription	Osteobl	bone
17	chr13:50482200-50488000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr13:50482200-50490400	Weak transcription	Fetal Muscle Leg	muscle
19	chr13:50482400-50488000	Weak transcription	HMEC	breast
20	chr13:50482400-50489600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr13:50482600-50488000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr13:50482600-50490200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr13:50482600-50490400	Weak transcription	NHLF	lung
24	chr13:50482600-50509600	Weak transcription	Primary B cells from cord blood	blood
25	chr13:50482800-50488000	Weak transcription	Placenta	Placenta
26	chr13:50483000-50492200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr13:50483800-50490200	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr13:50484000-50509600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr13:50484200-50490200	Weak transcription	Aorta	Aorta
30	chr13:50484200-50491600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr13:50484200-50494000	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr13:50484400-50488000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr13:50484400-50488000	Weak transcription	HSMM	muscle
34	chr13:50484400-50489800	Weak transcription	NHEK	skin
35	chr13:50484400-50490000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr13:50484400-50490200	Weak transcription	NH-A	brain
37	chr13:50484400-50493600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr13:50484400-50501800	Weak transcription	HSMMtube	muscle
39	chr13:50484400-50509400	Weak transcription	Fetal Kidney	kidney
40	chr13:50484600-50486200	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr13:50484600-50486200	Weak transcription	Left Ventricle	heart
42	chr13:50484600-50486200	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr13:50484600-50488200	Weak transcription	NHDF-Ad	bronchial
44	chr13:50484600-50490400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr13:50484600-50490600	Weak transcription	Brain Angular Gyrus	brain
46	chr13:50484600-50492200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr13:50484600-50493000	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr13:50484600-50495200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr13:50484600-50509600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr13:50484800-50490000	Weak transcription	Fetal Muscle Trunk	muscle

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