Variant report

Variant	rs73236763
Chromosome Location	chr14:36562332-36562333
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:36560154..36563074-chr14:36570402..36572579,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10145278	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12433633	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12433659	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17103955	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17103957	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17103967	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17103972	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17103988	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17104022	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17104029	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57852889	1.00[EUR][1000 genomes]
rs7145193	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7146795	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7147273	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73236709	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73236750	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73236756	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236768	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236770	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236773	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236774	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236778	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73249995	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73249996	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73251666	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74044231	0.88[ASN][1000 genomes]
rs74044282	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051045	chr14:36116503-36764947	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv542038	chr14:36116503-36764947	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1051147	chr14:36413342-36562863	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1040256	chr14:36501452-37172046	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv542040	chr14:36501452-37172046	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
6	nsv1041441	chr14:36545463-36756347	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv542041	chr14:36545463-36756347	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:36560800-36563000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr14:36560800-36565600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:36561000-36565200	Weak transcription	NHEK	skin
4	chr14:36561000-36565400	Weak transcription	HMEC	breast
5	chr14:36561000-36565600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:36561600-36564800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:36561600-36565200	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links