Variant report

Variant	rs73240751
Chromosome Location	chr8:66626684-66626685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PDE7A-1	chr8:66626569-66627013	ENSG00000272155.1

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10504389	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932286	0.83[EUR][1000 genomes]
rs16932294	0.89[EUR][1000 genomes]
rs17304516	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57220512	0.83[EUR][1000 genomes]
rs60860867	0.81[EUR][1000 genomes]
rs61316312	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs66802499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66831149	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66850618	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66851666	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66987979	1.00[ASN][1000 genomes]
rs67102418	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67514002	0.89[EUR][1000 genomes]
rs67679220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67686346	1.00[ASN][1000 genomes]
rs67724994	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68077070	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6986048	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7002171	0.89[EUR][1000 genomes]
rs7002953	0.89[EUR][1000 genomes]
rs7008671	0.81[EUR][1000 genomes]
rs72664797	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72666512	0.81[EUR][1000 genomes]
rs72666522	0.89[EUR][1000 genomes]
rs72666526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73239047	0.83[EUR][1000 genomes]
rs73240726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73240774	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7465049	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7829562	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs73240751	MTFR1	cis	Muscle Skeletal	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66572000-66628400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr8:66573800-66630400	Weak transcription	Spleen	Spleen
3	chr8:66584800-66628600	Weak transcription	NHLF	lung
4	chr8:66587800-66628000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr8:66593400-66628400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr8:66593800-66630000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr8:66597600-66628600	Weak transcription	Small Intestine	intestine
8	chr8:66599200-66633000	Weak transcription	Fetal Kidney	kidney
9	chr8:66602000-66627400	Weak transcription	Thymus	Thymus
10	chr8:66602800-66641800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr8:66602800-66650600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr8:66605600-66628400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr8:66606600-66639400	Weak transcription	Fetal Heart	heart
14	chr8:66607000-66627200	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr8:66611600-66634600	Weak transcription	Fetal Brain Male	brain
16	chr8:66612000-66629000	Weak transcription	Pancreas	Pancrea
17	chr8:66613400-66634600	Weak transcription	Colonic Mucosa	Colon
18	chr8:66616000-66628600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr8:66616000-66630400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr8:66616200-66628400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr8:66616600-66629800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr8:66617000-66628400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr8:66617600-66629000	Weak transcription	Fetal Intestine Small	intestine
24	chr8:66617600-66630400	Weak transcription	Gastric	stomach
25	chr8:66617600-66646200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr8:66617800-66630600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr8:66618000-66629000	Weak transcription	Esophagus	oesophagus
28	chr8:66618400-66626800	Strong transcription	Liver	Liver
29	chr8:66618400-66628400	Weak transcription	Stomach Mucosa	stomach
30	chr8:66618600-66630400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr8:66620200-66628400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr8:66620200-66632000	Weak transcription	Brain Anterior Caudate	brain
33	chr8:66620200-66632800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr8:66620400-66627400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr8:66620400-66627400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr8:66620400-66628400	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr8:66620400-66628400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr8:66620400-66628400	Weak transcription	NH-A	brain
39	chr8:66620400-66628600	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr8:66620400-66628600	Weak transcription	Fetal Intestine Large	intestine
41	chr8:66620400-66629600	Weak transcription	HSMMtube	muscle
42	chr8:66620400-66630600	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr8:66620400-66630800	Weak transcription	Brain Cingulate Gyrus	brain
44	chr8:66620400-66630800	Weak transcription	Brain Hippocampus Middle	brain
45	chr8:66620400-66631400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr8:66620400-66631400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr8:66620600-66628200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr8:66620600-66629000	Weak transcription	HSMM	muscle
49	chr8:66620800-66628400	Weak transcription	Brain Germinal Matrix	brain
50	chr8:66620800-66628400	Weak transcription	Stomach Smooth Muscle	stomach

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