Variant report

Variant	rs16932294
Chromosome Location	chr8:66592103-66592104
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1022253	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1022254	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10504389	0.83[EUR][1000 genomes]
rs11995337	0.82[JPT][hapmap];1.00[ASN][1000 genomes]
rs16932261	1.00[CHB][hapmap]
rs16932266	1.00[CHB][hapmap]
rs16932286	0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932315	1.00[CHB][hapmap]
rs17303905	0.82[JPT][hapmap];0.83[YRI][hapmap];0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17304516	0.89[EUR][1000 genomes]
rs17394860	1.00[ASN][1000 genomes]
rs17394924	0.82[JPT][hapmap];0.83[YRI][hapmap];0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs17395816	0.80[YRI][hapmap]
rs2357478	0.82[JPT][hapmap];1.00[ASN][1000 genomes]
rs35524385	0.82[JPT][hapmap];0.83[YRI][hapmap];0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs41343545	0.82[JPT][hapmap];0.83[YRI][hapmap];0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4497004	0.82[JPT][hapmap];0.83[YRI][hapmap];0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56698878	0.86[AFR][1000 genomes]
rs57220512	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57962817	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58398396	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58594670	0.95[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs60824178	0.95[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs66773449	0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs66802499	0.89[EUR][1000 genomes]
rs66817670	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs66820398	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs66824691	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs66831149	0.89[EUR][1000 genomes]
rs66850618	0.83[EUR][1000 genomes]
rs66851666	0.83[EUR][1000 genomes]
rs66901832	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs66908793	0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs67102418	0.89[EUR][1000 genomes]
rs67125822	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67202221	1.00[ASN][1000 genomes]
rs67362541	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67433957	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67445866	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67514002	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67578481	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67669255	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67679220	0.89[EUR][1000 genomes]
rs67692803	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67724994	0.82[EUR][1000 genomes]
rs67827113	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs68075342	1.00[ASN][1000 genomes]
rs68077070	0.83[EUR][1000 genomes]
rs68087267	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs68167505	1.00[ASN][1000 genomes]
rs6986048	0.83[EUR][1000 genomes]
rs6991669	0.82[JPT][hapmap];0.83[YRI][hapmap];0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7002171	0.82[JPT][hapmap];0.83[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7002494	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7002953	0.82[JPT][hapmap];0.83[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666512	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666522	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666525	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72666526	0.89[EUR][1000 genomes]
rs73239047	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73239052	1.00[ASN][1000 genomes]
rs73239095	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73240726	0.89[EUR][1000 genomes]
rs73240732	1.00[ASN][1000 genomes]
rs73240751	0.89[EUR][1000 genomes]
rs7463538	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7465049	0.88[EUR][1000 genomes]
rs7825615	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7829562	0.89[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs16932294	MTFR1	Cis_1M	lymphoblastoid	RTeQTL
rs16932294	MTFR1	cis	multi-tissue	Pritchard
rs16932294	MTFR1	cis	Muscle Skeletal	GTEx

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66558400-66606800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr8:66567200-66616800	Weak transcription	Gastric	stomach
3	chr8:66571400-66605800	Weak transcription	Primary T cells from cord blood	blood
4	chr8:66571400-66606600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr8:66571800-66616800	Weak transcription	Esophagus	oesophagus
6	chr8:66571800-66619600	Weak transcription	Brain Hippocampus Middle	brain
7	chr8:66572000-66594400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:66572000-66595200	Weak transcription	HSMMtube	muscle
9	chr8:66572000-66595800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:66572000-66605800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr8:66572000-66606800	Weak transcription	HUVEC	blood vessel
12	chr8:66572000-66607000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:66572000-66607000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr8:66572000-66609000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr8:66572000-66611400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr8:66572000-66612800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr8:66572000-66616600	Weak transcription	HMEC	breast
18	chr8:66572000-66617000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr8:66572000-66617600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr8:66572000-66617800	Weak transcription	NHDF-Ad	bronchial
21	chr8:66572000-66619600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr8:66572000-66619600	Weak transcription	NHEK	skin
23	chr8:66572000-66619800	Weak transcription	Lung	lung
24	chr8:66572000-66628400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr8:66572200-66619800	Weak transcription	A549	lung
26	chr8:66572400-66595000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr8:66573800-66595800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr8:66573800-66615200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr8:66573800-66630400	Weak transcription	Spleen	Spleen
30	chr8:66574200-66608600	Weak transcription	Fetal Muscle Leg	muscle
31	chr8:66574400-66616800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr8:66578400-66605800	Weak transcription	Adipose Nuclei	Adipose
33	chr8:66579000-66611200	Weak transcription	Pancreas	Pancrea
34	chr8:66579400-66594600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr8:66579600-66606800	Weak transcription	NH-A	brain
36	chr8:66579600-66607600	Weak transcription	Fetal Intestine Large	intestine
37	chr8:66579800-66596000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr8:66580000-66619600	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr8:66580400-66618600	Weak transcription	Osteobl	bone
40	chr8:66580400-66619800	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr8:66580600-66619400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr8:66581000-66594800	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr8:66581000-66603000	Weak transcription	K562	blood
44	chr8:66581000-66609600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr8:66581000-66619600	Weak transcription	Fetal Lung	lung
46	chr8:66581200-66594000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr8:66581200-66619400	Weak transcription	Brain Cingulate Gyrus	brain
48	chr8:66581400-66595000	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr8:66581400-66595000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr8:66581600-66600000	Weak transcription	Fetal Intestine Small	intestine

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