Variant report

Variant	rs67827113
Chromosome Location	chr8:66573613-66573614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66555595..66558043-chr8:66573287..66575048,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000066855	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1022253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1022254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995337	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932286	1.00[ASN][1000 genomes]
rs16932294	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17303905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17394860	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17394924	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2357478	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35524385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41343545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4497004	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56698878	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57220512	0.98[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs57962817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58398396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58594670	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60824178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66773449	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66817670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66820398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66824691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66901832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66908793	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67125822	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67202221	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67362541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67433957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67445866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67514002	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67578481	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67669255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67686346	0.87[EUR][1000 genomes]
rs67692803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68075342	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68087267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68167505	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6991669	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7002171	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7002494	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7002953	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72666512	1.00[ASN][1000 genomes]
rs72666522	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72666525	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73239047	1.00[ASN][1000 genomes]
rs73239052	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73239095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73240732	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7463538	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7825615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66558000-66582400	Weak transcription	Placenta	Placenta
2	chr8:66558000-66583400	Weak transcription	Aorta	Aorta
3	chr8:66558000-66585200	Weak transcription	Left Ventricle	heart
4	chr8:66558400-66606800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr8:66567200-66616800	Weak transcription	Gastric	stomach
6	chr8:66568800-66574000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr8:66569800-66573800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:66571400-66590800	Weak transcription	Stomach Mucosa	stomach
9	chr8:66571400-66605800	Weak transcription	Primary T cells from cord blood	blood
10	chr8:66571400-66606600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr8:66571800-66573800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr8:66571800-66616800	Weak transcription	Esophagus	oesophagus
13	chr8:66571800-66619600	Weak transcription	Brain Hippocampus Middle	brain
14	chr8:66572000-66574200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:66572000-66579800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr8:66572000-66581200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:66572000-66583000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr8:66572000-66583600	Weak transcription	Liver	Liver
19	chr8:66572000-66584000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr8:66572000-66584000	Weak transcription	HepG2	liver
21	chr8:66572000-66585200	Weak transcription	HSMM	muscle
22	chr8:66572000-66585600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr8:66572000-66594400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr8:66572000-66595200	Weak transcription	HSMMtube	muscle
25	chr8:66572000-66595800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr8:66572000-66605800	Weak transcription	Fetal Muscle Trunk	muscle
27	chr8:66572000-66606800	Weak transcription	HUVEC	blood vessel
28	chr8:66572000-66607000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr8:66572000-66607000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr8:66572000-66609000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr8:66572000-66611400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr8:66572000-66612800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr8:66572000-66616600	Weak transcription	HMEC	breast
34	chr8:66572000-66617000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr8:66572000-66617600	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr8:66572000-66617800	Weak transcription	NHDF-Ad	bronchial
37	chr8:66572000-66619600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr8:66572000-66619600	Weak transcription	NHEK	skin
39	chr8:66572000-66619800	Weak transcription	Lung	lung
40	chr8:66572000-66628400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr8:66572200-66580000	Weak transcription	K562	blood
42	chr8:66572200-66585200	Weak transcription	Primary B cells from cord blood	blood
43	chr8:66572200-66592000	Weak transcription	Hela-S3	cervix
44	chr8:66572200-66619800	Weak transcription	A549	lung
45	chr8:66572400-66573800	Weak transcription	Fetal Intestine Small	intestine
46	chr8:66572400-66595000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr8:66573000-66579000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr8:66573200-66573800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr8:66573200-66583000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr8:66573600-66573800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell

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