Variant report

Variant	rs66820398
Chromosome Location	chr8:66565172-66565173
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1022253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1022254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995337	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932286	1.00[ASN][1000 genomes]
rs16932294	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17303905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17394860	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17394924	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2357478	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35524385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41343545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4497004	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56698878	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57220512	0.98[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs57962817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58398396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58594670	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60824178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66773449	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66817670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66824691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66901832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66908793	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67125822	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67202221	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67362541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67433957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67445866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67514002	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67578481	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67669255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67686346	0.91[EUR][1000 genomes]
rs67692803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67827113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68075342	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68087267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68167505	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6991669	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7002171	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7002494	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7002953	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72666512	1.00[ASN][1000 genomes]
rs72666522	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72666525	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73239047	1.00[ASN][1000 genomes]
rs73239052	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73239095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73240732	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7463538	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7825615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66558000-66565200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:66558000-66567000	Weak transcription	Gastric	stomach
3	chr8:66558000-66567200	Weak transcription	Adipose Nuclei	Adipose
4	chr8:66558000-66567400	Weak transcription	Ovary	ovary
5	chr8:66558000-66568800	Weak transcription	Fetal Intestine Small	intestine
6	chr8:66558000-66569400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr8:66558000-66569600	Weak transcription	Esophagus	oesophagus
8	chr8:66558000-66571000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:66558000-66571000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr8:66558000-66571000	Weak transcription	Fetal Lung	lung
11	chr8:66558000-66571000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr8:66558000-66571000	Weak transcription	Fetal Muscle Leg	muscle
13	chr8:66558000-66571000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr8:66558000-66571000	Weak transcription	Thymus	Thymus
15	chr8:66558000-66571000	Weak transcription	HSMMtube	muscle
16	chr8:66558000-66571000	Weak transcription	NH-A	brain
17	chr8:66558000-66571200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:66558000-66571200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr8:66558000-66571600	Weak transcription	Lung	lung
20	chr8:66558000-66582400	Weak transcription	Placenta	Placenta
21	chr8:66558000-66583400	Weak transcription	Aorta	Aorta
22	chr8:66558000-66585200	Weak transcription	Left Ventricle	heart
23	chr8:66558200-66569600	Weak transcription	Fetal Stomach	stomach
24	chr8:66558200-66570600	Weak transcription	Fetal Intestine Large	intestine
25	chr8:66558200-66570800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr8:66558200-66570800	Weak transcription	Primary B cells from cord blood	blood
27	chr8:66558200-66570800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr8:66558200-66571000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr8:66558200-66571000	Weak transcription	HSMM	muscle
30	chr8:66558200-66571200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr8:66558200-66573600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr8:66558400-66567200	Weak transcription	Stomach Mucosa	stomach
33	chr8:66558400-66567600	Weak transcription	NHDF-Ad	bronchial
34	chr8:66558400-66568800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr8:66558400-66569400	Weak transcription	Duodenum Mucosa	Duodenum
36	chr8:66558400-66569800	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr8:66558400-66570000	Weak transcription	Osteobl	bone
38	chr8:66558400-66571000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr8:66558400-66606800	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr8:66558600-66565400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr8:66558600-66566800	Weak transcription	A549	lung
42	chr8:66558600-66567000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr8:66558600-66569000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr8:66558600-66569800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr8:66558600-66570000	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr8:66558600-66570800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr8:66558600-66570800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr8:66558600-66571000	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr8:66558600-66571200	Weak transcription	Brain Hippocampus Middle	brain
50	chr8:66558800-66569400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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