Variant report

Variant	rs73241296
Chromosome Location	chr8:66954091-66954092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66753081..66754975-chr8:66954019..66955590,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000205268	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4549750	0.82[AFR][1000 genomes]
rs73241293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241300	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73243218	0.89[AFR][1000 genomes]
rs73243220	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66946400-66955000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr8:66948800-66954200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr8:66949800-66958000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:66950400-66958000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:66952400-66954200	Enhancers	HSMMtube	muscle
6	chr8:66953000-66955000	Weak transcription	Psoas Muscle	Psoas
7	chr8:66953800-66954200	Flanking Active TSS	A549	lung
8	chr8:66954000-66954200	Enhancers	Gastric	stomach
9	chr8:66954000-66954200	Enhancers	Small Intestine	intestine
10	chr8:66954000-66954200	Flanking Active TSS	Stomach Mucosa	stomach
11	chr8:66954000-66954200	Bivalent Enhancer	HSMM	muscle
12	chr8:66954000-66954200	Flanking Active TSS	NHLF	lung
13	chr8:66954000-66954400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:66954000-66954600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:66954000-66954600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:66954000-66954600	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
17	chr8:66954000-66954600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr8:66954000-66954600	Enhancers	GM12878-XiMat	blood
19	chr8:66954000-66954600	Enhancers	HMEC	breast
20	chr8:66954000-66954600	Flanking Active TSS	NHDF-Ad	bronchial
21	chr8:66954000-66954600	Flanking Active TSS	Osteobl	bone
22	chr8:66954000-66954800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr8:66954000-66954800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr8:66954000-66955200	Enhancers	Primary monocytes fromperipheralblood	blood

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