Variant report

Variant	rs73242644
Chromosome Location	chr4:57957882-57957883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:57947814..57949862-chr4:57955509..57958047,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs28656154	0.93[ASN][1000 genomes]
rs73242642	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs73242643	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73242645	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs73242646	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73242647	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73242650	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs73242651	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73242656	0.83[AFR][1000 genomes]
rs73242657	0.83[AFR][1000 genomes]
rs73242659	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57942800-57960400	Weak transcription	Psoas Muscle	Psoas
2	chr4:57944400-57964000	Weak transcription	Fetal Thymus	thymus
3	chr4:57945200-57958000	Weak transcription	Gastric	stomach
4	chr4:57945200-57960400	Weak transcription	Pancreas	Pancrea
5	chr4:57947200-57958000	Weak transcription	Aorta	Aorta
6	chr4:57948400-57965200	Weak transcription	Brain Anterior Caudate	brain
7	chr4:57948600-57960400	Weak transcription	HSMM	muscle
8	chr4:57950000-57958200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr4:57950000-57960000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:57950000-57960400	Weak transcription	Right Atrium	heart
11	chr4:57950000-57963800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr4:57950800-57960400	Weak transcription	NHLF	lung
13	chr4:57952000-57958600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:57954000-57958200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:57955400-57958800	Enhancers	HUVEC	blood vessel
16	chr4:57955800-57958200	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr4:57955800-57958200	Enhancers	Right Ventricle	heart
18	chr4:57955800-57960400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr4:57956200-57958000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr4:57956200-57958400	Enhancers	Fetal Heart	heart
21	chr4:57956200-57960800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:57956200-57964000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:57956400-57958000	Strong transcription	HSMMtube	muscle
24	chr4:57956400-57960200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr4:57956400-57960400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr4:57956400-57960400	Weak transcription	Adipose Nuclei	Adipose
27	chr4:57956400-57965400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr4:57956600-57960400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr4:57956600-57960600	Weak transcription	NHEK	skin
30	chr4:57956800-57958400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr4:57956800-57958400	Weak transcription	Brain Substantia Nigra	brain
32	chr4:57956800-57974400	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr4:57957000-57958000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr4:57957000-57958800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr4:57957000-57960200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr4:57957000-57960400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr4:57957000-57960400	Weak transcription	Lung	lung
38	chr4:57957000-57974600	Weak transcription	Primary hematopoietic stem cells	blood
39	chr4:57957200-57958000	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr4:57957200-57958000	Enhancers	Fetal Kidney	kidney
41	chr4:57957200-57958200	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr4:57957200-57975200	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr4:57957400-57958000	Enhancers	Fetal Lung	lung
44	chr4:57957400-57958200	Enhancers	H9 Cell Line	embryonic stem cell
45	chr4:57957400-57958200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr4:57957400-57958200	Genic enhancers	Osteobl	bone
47	chr4:57957400-57958400	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr4:57957400-57958600	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr4:57957400-57958600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr4:57957400-57967000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links