Variant report

Variant	rs73246176
Chromosome Location	chr8:65296522-65296523
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2017170	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs298176	0.81[AFR][1000 genomes]
rs298177	0.83[AFR][1000 genomes]
rs298183	0.83[AFR][1000 genomes]
rs298184	0.83[AFR][1000 genomes]
rs298186	0.83[AFR][1000 genomes]
rs298199	0.83[AFR][1000 genomes]
rs298200	0.83[AFR][1000 genomes]
rs7014130	1.00[AMR][1000 genomes]
rs73246779	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7834909	0.85[AFR][1000 genomes]
rs7834913	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948343	chr8:64804219-65328394	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	esv1825065	chr8:65244654-65311200	Bivalent Enhancer Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65290600-65296800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:65293400-65297000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:65293400-65298000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr8:65295000-65298200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:65295200-65297400	Weak transcription	Fetal Brain Female	brain
6	chr8:65296000-65297000	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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