Variant report
| Variant | rs73246779 |
|---|---|
| Chromosome Location | chr8:65324630-65324631 |
| allele | C/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CYP7B1-3 | chr8:65324400-65324649 | XLOC_007102 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs2017170 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2246411 | 0.81[AFR][1000 genomes] |
| rs298176 | 0.83[AFR][1000 genomes] |
| rs298177 | 0.85[AFR][1000 genomes] |
| rs298183 | 0.85[AFR][1000 genomes] |
| rs298184 | 0.85[AFR][1000 genomes] |
| rs298186 | 0.85[AFR][1000 genomes] |
| rs298199 | 0.85[AFR][1000 genomes] |
| rs298200 | 0.85[AFR][1000 genomes] |
| rs59268308 | 1.00[EUR][1000 genomes] |
| rs7014130 | 1.00[AMR][1000 genomes] |
| rs73246176 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73246729 | 1.00[EUR][1000 genomes] |
| rs73248329 | 1.00[EUR][1000 genomes] |
| rs7834909 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7834913 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948343 | chr8:64804219-65328394 | Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv534001 | chr8:64992196-65798776 | Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
