Variant report

Variant	rs73246180
Chromosome Location	chr8:65297525-65297526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs58442893	0.83[AFR][1000 genomes]
rs59330690	1.00[AFR][1000 genomes]
rs59355904	1.00[AFR][1000 genomes]
rs73244530	1.00[EUR][1000 genomes]
rs73244565	1.00[EUR][1000 genomes]
rs73246168	0.95[AFR][1000 genomes]
rs73246189	1.00[AFR][1000 genomes]
rs73246200	1.00[AFR][1000 genomes]
rs73246209	1.00[EUR][1000 genomes]
rs73246238	1.00[EUR][1000 genomes]
rs73248315	0.91[AFR][1000 genomes]
rs73248316	0.91[AFR][1000 genomes]
rs73248341	0.80[AFR][1000 genomes]
rs73248376	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948343	chr8:64804219-65328394	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	esv1825065	chr8:65244654-65311200	Bivalent Enhancer Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65293400-65298000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:65295000-65298200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:65296800-65305000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:65297000-65299200	Enhancers	Fetal Brain Male	brain
5	chr8:65297400-65299000	Enhancers	Fetal Brain Female	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links