Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BHLHE22-1	chr8:65294160-65295843	ENSG00000254377.1
2	lnc-BHLHE22-1	chr8:65294160-65296344	ENSG00000254377.1
3	lnc-BHLHE22-1	chr8:65294160-65300061	NR_109792

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16931279	1.00[EUR][1000 genomes]
rs55730348	1.00[EUR][1000 genomes]
rs58442893	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58668300	1.00[EUR][1000 genomes]
rs58715144	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58897334	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59355904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6994261	1.00[EUR][1000 genomes]
rs73234031	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73234094	1.00[EUR][1000 genomes]
rs73237705	1.00[EUR][1000 genomes]
rs73237734	1.00[EUR][1000 genomes]
rs73237742	1.00[EUR][1000 genomes]
rs73237746	1.00[EUR][1000 genomes]
rs73237756	1.00[EUR][1000 genomes]
rs73237764	1.00[EUR][1000 genomes]
rs73246168	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246180	1.00[AFR][1000 genomes]
rs73246189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73246200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73248315	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73248316	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73248341	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73248376	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948343	chr8:64804219-65328394	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	esv1825065	chr8:65244654-65311200	Bivalent Enhancer Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65290600-65296800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:65293400-65297000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:65293400-65298000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr8:65294400-65296000	Enhancers	Fetal Brain Male	brain
5	chr8:65294600-65296200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr8:65295000-65298200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:65295200-65297400	Weak transcription	Fetal Brain Female	brain

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