Variant report
| Variant | rs58715144 |
|---|---|
| Chromosome Location | chr8:65382564-65382565 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs16931279 | 1.00[EUR][1000 genomes] |
| rs55730348 | 1.00[EUR][1000 genomes] |
| rs58668300 | 1.00[EUR][1000 genomes] |
| rs58897334 | 1.00[EUR][1000 genomes] |
| rs59330690 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59355904 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6994261 | 1.00[EUR][1000 genomes] |
| rs73234031 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73234094 | 1.00[EUR][1000 genomes] |
| rs73237705 | 1.00[EUR][1000 genomes] |
| rs73237734 | 1.00[EUR][1000 genomes] |
| rs73237742 | 1.00[EUR][1000 genomes] |
| rs73237746 | 1.00[EUR][1000 genomes] |
| rs73237756 | 1.00[EUR][1000 genomes] |
| rs73237764 | 1.00[EUR][1000 genomes] |
| rs73237765 | 1.00[EUR][1000 genomes] |
| rs73237766 | 1.00[EUR][1000 genomes] |
| rs73246168 | 0.83[AMR][1000 genomes] |
| rs73246189 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73246200 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73248315 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73248316 | 1.00[EUR][1000 genomes] |
| rs73248341 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73248376 | 1.00[EUR][1000 genomes] |
| rs73689571 | 1.00[EUR][1000 genomes] |
| rs7817370 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534001 | chr8:64992196-65798776 | Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:65382000-65384600 | Enhancers | HMEC | breast |
