Variant report
| Variant | rs7817370 |
|---|---|
| Chromosome Location | chr8:65617523-65617524 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:65610299..65612672-chr8:65616238..65617888,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs16931279 | 1.00[EUR][1000 genomes] |
| rs55730348 | 1.00[EUR][1000 genomes] |
| rs58668300 | 1.00[EUR][1000 genomes] |
| rs58715144 | 1.00[EUR][1000 genomes] |
| rs58897334 | 1.00[EUR][1000 genomes] |
| rs6988434 | 1.00[EUR][1000 genomes] |
| rs6994261 | 1.00[EUR][1000 genomes] |
| rs7003587 | 1.00[EUR][1000 genomes] |
| rs73234031 | 1.00[EUR][1000 genomes] |
| rs73234094 | 1.00[EUR][1000 genomes] |
| rs73237705 | 1.00[EUR][1000 genomes] |
| rs73237734 | 1.00[EUR][1000 genomes] |
| rs73237742 | 1.00[EUR][1000 genomes] |
| rs73237746 | 1.00[EUR][1000 genomes] |
| rs73237756 | 1.00[EUR][1000 genomes] |
| rs73237764 | 1.00[EUR][1000 genomes] |
| rs73237765 | 1.00[EUR][1000 genomes] |
| rs73237766 | 1.00[EUR][1000 genomes] |
| rs73689571 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7821719 | 1.00[EUR][1000 genomes] |
| rs7827701 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7832640 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7833820 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9694711 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534001 | chr8:64992196-65798776 | Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | esv2761434 | chr8:65578467-66567678 | Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:65617400-65618400 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
