Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16931279	1.00[EUR][1000 genomes]
rs55730348	1.00[EUR][1000 genomes]
rs58897334	1.00[EUR][1000 genomes]
rs6988434	1.00[EUR][1000 genomes]
rs6994261	1.00[EUR][1000 genomes]
rs7003587	1.00[EUR][1000 genomes]
rs73234094	1.00[EUR][1000 genomes]
rs73237705	1.00[EUR][1000 genomes]
rs73237734	1.00[EUR][1000 genomes]
rs73237742	1.00[EUR][1000 genomes]
rs73237746	1.00[EUR][1000 genomes]
rs73237756	1.00[EUR][1000 genomes]
rs73237764	1.00[EUR][1000 genomes]
rs73237765	1.00[EUR][1000 genomes]
rs73237766	1.00[EUR][1000 genomes]
rs73689571	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7817370	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7821719	1.00[EUR][1000 genomes]
rs7827701	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7832640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7833820	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65642200-65645400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:65643000-65645000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:65643000-65646000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr8:65644000-65645000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:65644000-65647200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:65644200-65644600	ZNF genes & repeats	Ovary	ovary
7	chr8:65644200-65645000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:65644200-65645000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
9	chr8:65644200-65645400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
10	chr8:65644400-65645200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr8:65644400-65645600	ZNF genes & repeats	Fetal Muscle Leg	muscle

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