Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11906138	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12624468	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12625750	0.85[ASN][1000 genomes]
rs4142357	0.80[EUR][1000 genomes]
rs59126461	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6131219	0.80[EUR][1000 genomes]
rs6131220	0.80[EUR][1000 genomes]
rs6131221	0.80[EUR][1000 genomes]
rs6134264	0.80[EUR][1000 genomes]
rs6134265	0.80[EUR][1000 genomes]
rs6134267	0.80[EUR][1000 genomes]
rs6134269	0.80[EUR][1000 genomes]
rs6134270	0.81[EUR][1000 genomes]
rs68160848	0.83[EUR][1000 genomes]
rs7262680	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73079865	0.80[AMR][1000 genomes]
rs73081803	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73081847	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs742825	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8114712	0.80[EUR][1000 genomes]
rs978690	0.80[EUR][1000 genomes]
rs978692	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv432099	chr20:11371093-11476900	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1058734	chr20:11389232-11479953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv522929	chr20:11411026-11516418	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11449000-11457800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search: